Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq5638 116 2e-21 seq22 111 1e-19 >seq5638 Length=539 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 355 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGT 414 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 415 GGTCGTATTTAGCCTTA 431 >seq22 Length=171845 Score = 111 bits (122), Expect = 1e-19 Identities = 167/236 (71%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 38084 ATCATTA-CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGT 38142 |||| || ||||| | | ||| | ||||||||||| ||| ||| ||||||||||||| Sbjct 88114 ATCAGTAGCCACCACGAAGACGGAGAACCAAATGAAGTGTGGACTCTTTTTGAATATTGT 88173 Query 38143 AATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGAT 38202 | ||||||| || | || || || || ||||||||||| || | |||||||||| Sbjct 88174 AGTCAGACAGTGTGCGGCCATCTTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGAT 88233 Query 38203 CGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC 38262 | | |||| ||| || || ||| ||| || || ||||| | | ||||| | Sbjct 88234 CTGGTGGGATGCCCTCCTTATCCTGAATCTTGGCTTTGACATTTTCAATCGTATCAGAAG 88293 Query 38263 TTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || || || || || || |||| ||||| || |||||||||||| Sbjct 88294 CCTCTACCTCCAAAGTGATCGTCTTGCCAGTCAGCGTTTTGACAAATATCTGCATG 88349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334923613227518