Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24]
5,778 sequences; 75,392,092 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq5638 116 2e-21
seq22 111 1e-19
>seq5638
Length=539
Score = 116 bits (128), Expect = 2e-21
Identities = 72/77 (94%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 355 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGT 414
Query 20007 GGTAATATTTAGCCTTA 20023
||| ||||||||||||
Sbjct 415 GGTCGTATTTAGCCTTA 431
>seq22
Length=171845
Score = 111 bits (122), Expect = 1e-19
Identities = 167/236 (71%), Gaps = 1/236 (0%)
Strand=Plus/Plus
Query 38084 ATCATTA-CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGT 38142
|||| || ||||| | | ||| | ||||||||||| ||| ||| |||||||||||||
Sbjct 88114 ATCAGTAGCCACCACGAAGACGGAGAACCAAATGAAGTGTGGACTCTTTTTGAATATTGT 88173
Query 38143 AATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGAT 38202
| ||||||| || | || || || || ||||||||||| || | ||||||||||
Sbjct 88174 AGTCAGACAGTGTGCGGCCATCTTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGAT 88233
Query 38203 CGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC 38262
| | |||| ||| || || ||| ||| || || ||||| | | ||||| |
Sbjct 88234 CTGGTGGGATGCCCTCCTTATCCTGAATCTTGGCTTTGACATTTTCAATCGTATCAGAAG 88293
Query 38263 TTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| || || || || || || || || |||| ||||| || ||||||||||||
Sbjct 88294 CCTCTACCTCCAAAGTGATCGTCTTGCCAGTCAGCGTTTTGACAAATATCTGCATG 88349
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334923613227518
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |