Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24]
5,778 sequences; 75,392,092 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq22 123 2e-23
seq546 86.0 5e-12
>seq22
Length=171845
Score = 123 bits (136), Expect = 2e-23
Identities = 115/143 (80%), Gaps = 6/143 (4%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||||||||||||||||||| |||| |||||| | ||||| | ||||| ||| | |||
Sbjct 89023 ATGCAAATATTTGTAAAGACTCTGACTGGTAAAACGATCACCTTGGAAGTTGAGGCTTCT 88964
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||||||||| | || ||||||| | ||| ||||| ||||| ||||| || |||
Sbjct 88963 GACACTATCGA--AAATGTTAAAGCAAAGATTCA-AGACAAGGAAGGAATTCCGCCGGAC 88907
Query 25116 CAACAGCGGATTATTTTTGCCGG 25138
|| ||||| |||||||||||||
Sbjct 88906 CAGCAGCGACTTATTTTTGCCGG 88884
Score = 113 bits (124), Expect = 4e-20
Identities = 156/216 (72%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| |||||||| || || |||| || || | ||||| | || || ||| | |||
Sbjct 88348 ATGCAGATATTTGTCAAAACGCTGACTGGCAAGACGATCACTTTGGAGGTAGAGGCTTCT 88289
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || || || |||| |||| || | ||| || || || || || ||||| ||
Sbjct 88288 GATACGATTGAAAATGTCA---AAGCCAAGATTCAG-GATAAGGAGGGCATCCCACCAGA 88233
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||||| || | ||||||||||| || || || ||||||| ||||| || || ||
Sbjct 88232 TCAACAACGATTGATTTTTGCCGGAAAGCAGTTGGAAGATGGCCGCACACTGTCTGACTA 88173
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||||||||||||| ||||| || ||||| || ||
Sbjct 88172 CAATATTCAAAAAGAGTCCACACTTCATTTGGTTCT 88137
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || || || |||| ||||| | ||||| |||| || || | ||
Sbjct 89933 ATGCAAATTTTCGTGAAAACACTGACTGGTAAGACTATCACCCTCGAGGTTGAAGCTTCC 89874
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||||||||| ||||| |||||| || || ||||| ||||||||||| ||
Sbjct 89873 GACACTATCGAAAATGTGAAGGCCAAAATCCAAGATAAGGAAGGTATTCCACCTGATCAG 89814
Query 25119 CAGCGGATTATTTTTGCCGG 25138
||||| | |||||||| ||
Sbjct 89813 CAGCGCCTAATTTTTGCTGG 89794
>seq546
Length=41299
Score = 86.0 bits (94), Expect = 5e-12
Identities = 107/144 (74%), Gaps = 6/144 (4%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| |||||||| || ||||| ||||| ||| | ||||| | ||||| || | ||
Sbjct 26591 AATGCAGATATTTGTTAAAACTTTAACCGGCAAAACAATCACTCTTGAAGTAGAAGCATC 26532
Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||| |||||||| | || || | |||| ||| ||||||||||| ||||| |||||
Sbjct 26531 TGATACTATCGAA--AATGTAAAATCTAAAATTCAG-GACAAAGAAGGCATTCCGCCTGA 26475
Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138
|| || | | |||||||| ||
Sbjct 26474 TCAGCAAAGACTCATTTTTGCAGG 26451
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433297485313070
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |