Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq22 123 2e-23 seq546 86.0 5e-12 >seq22 Length=171845 Score = 123 bits (136), Expect = 2e-23 Identities = 115/143 (80%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||||||||||||| |||| |||||| | ||||| | ||||| ||| | ||| Sbjct 89023 ATGCAAATATTTGTAAAGACTCTGACTGGTAAAACGATCACCTTGGAAGTTGAGGCTTCT 88964 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||||||||| | || ||||||| | ||| ||||| ||||| ||||| || ||| Sbjct 88963 GACACTATCGA--AAATGTTAAAGCAAAGATTCA-AGACAAGGAAGGAATTCCGCCGGAC 88907 Query 25116 CAACAGCGGATTATTTTTGCCGG 25138 || ||||| ||||||||||||| Sbjct 88906 CAGCAGCGACTTATTTTTGCCGG 88884 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || || |||| || || | ||||| | || || ||| | ||| Sbjct 88348 ATGCAGATATTTGTCAAAACGCTGACTGGCAAGACGATCACTTTGGAGGTAGAGGCTTCT 88289 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| |||| || | ||| || || || || || ||||| || Sbjct 88288 GATACGATTGAAAATGTCA---AAGCCAAGATTCAG-GATAAGGAGGGCATCCCACCAGA 88233 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | ||||||||||| || || || ||||||| ||||| || || || Sbjct 88232 TCAACAACGATTGATTTTTGCCGGAAAGCAGTTGGAAGATGGCCGCACACTGTCTGACTA 88173 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||||||||| ||||| || ||||| || || Sbjct 88172 CAATATTCAAAAAGAGTCCACACTTCATTTGGTTCT 88137 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || |||| ||||| | ||||| |||| || || | || Sbjct 89933 ATGCAAATTTTCGTGAAAACACTGACTGGTAAGACTATCACCCTCGAGGTTGAAGCTTCC 89874 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| ||||| |||||| || || ||||| ||||||||||| || Sbjct 89873 GACACTATCGAAAATGTGAAGGCCAAAATCCAAGATAAGGAAGGTATTCCACCTGATCAG 89814 Query 25119 CAGCGGATTATTTTTGCCGG 25138 ||||| | |||||||| || Sbjct 89813 CAGCGCCTAATTTTTGCTGG 89794 >seq546 Length=41299 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/144 (74%), Gaps = 6/144 (4%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| |||||||| || ||||| ||||| ||| | ||||| | ||||| || | || Sbjct 26591 AATGCAGATATTTGTTAAAACTTTAACCGGCAAAACAATCACTCTTGAAGTAGAAGCATC 26532 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| |||||||| | || || | |||| ||| ||||||||||| ||||| ||||| Sbjct 26531 TGATACTATCGAA--AATGTAAAATCTAAAATTCAG-GACAAAGAAGGCATTCCGCCTGA 26475 Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138 || || | | |||||||| || Sbjct 26474 TCAGCAAAGACTCATTTTTGCAGG 26451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433297485313070