Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq22 131 1e-25 seq59 118 9e-22 seq546 109 5e-19 >seq22 Length=171845 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || || ||| ||||| | || || || | | Sbjct 88348 ATGCAGATATTTGTCAAAACGCTGACTGGCAAGACGATCACTTTGGAGGTAGAGGCTTCT 88289 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| || ||||| || |||||||| || ||||| |||||| Sbjct 88288 GATACGATTGAAAATGTCAAAGCCAAGATTCAGGATAAGGAGGGCATCCCACCAGATCAA 88229 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || |||||||| || ||||| || ||| |||||| | || || ||||| Sbjct 88228 CAACGATTGATTTTTGCCGGAAAGCAGTTGGAAGATGGCCGCACACTGTCTGACTACAAT 88169 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 ||||||||||| ||||| | ||||| ||| Sbjct 88168 ATTCAAAAAGAGTCCACACTTCATTTGGTT 88139 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||| | || ||||||||| |||| | ||||| || | | Sbjct 89023 ATGCAAATATTTGTAAAGACTCTGACTGGTAAAACGATCACCTTGGAAGTTGAGGCTTCT 88964 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| ||| |||||||||||||| || ||||| || || || Sbjct 88963 GACACTATCGAAAATGTTAAAGCAAAGATTCAAGACAAGGAAGGAATTCCGCCGGACCAG 88904 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || ||||| |||||||| Sbjct 88903 CAGCGACTTATTTTTGCCGG 88884 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | || ||||| || |||| || || || ||| | || Sbjct 89933 ATGCAAATTTTCGTGAAAACACTGACTGGTAAGACTATCACCCTCGAGGTTGAAGCTTCC 89874 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || ||||| ||||| ||||| ||||||||||| ||||| Sbjct 89873 GACACTATCGAAAATGTGAAGGCCAAAATCCAAGATAAGGAAGGTATTCCACCTGATCAG 89814 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || || || ||||| || Sbjct 89813 CAGCGCCTAATTTTTGCTGG 89794 >seq59 Length=128137 Score = 118 bits (130), Expect = 9e-22 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 |||||||||||||||||||||||||||| || |||||||| | || ||||| |||||| Sbjct 72016 TAAAGATGCAAATTTTTGTTAAAACTTTGACTGGTAAAACAATTACACTTGAGGTGGAAT 71957 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | | || || | || || | || ||||| ||||||||||| || || || || | Sbjct 71956 CGTCAGACACAATTGAAAATGTTAAGGCTAAAATCCAAGACAAGGAAGGCATCCCTCCGG 71897 Query 22334 ATCAACAACGTCTTATATTTGCCGG 22358 ||||||| || ||||||||||| || Sbjct 71896 ATCAACAGCGCCTTATATTTGCTGG 71872 >seq546 Length=41299 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || |||||||||||||||||||| ||||| ||||||||||||| ||| | Sbjct 26593 AAAATGCAGATATTTGTTAAAACTTTAACCGGCAAAACAATCACTCTTGAAGTAGAAGCA 26534 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | ||| |||||||| ||||| || || ||||| || ||| Sbjct 26533 TCTGATACTATCGAAAATGTAAAATCTAAAATTCAGGACAAAGAAGGCATTCCGCCTGAT 26474 Query 22336 CAACAACGTCTTATATTTGCCGG 22358 || ||| | || || ||||| || Sbjct 26473 CAGCAAAGACTCATTTTTGCAGG 26451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419698443016570