Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24]
5,778 sequences; 75,392,092 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq22 87.8 2e-12
>seq22
Length=171845
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215
|| ||||| || | | ||| ||||| | || || ||||||||||| ||||| || |
Sbjct 88122 CCACCACGAAGACGGAGAACCAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCAGAC 88181
Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275
| || || |||||| | || || || || | || | || ||||| || || ||
Sbjct 88182 AGTGTGCGGCCATCTTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCTGGTGGG 88241
Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335
||||| || || || |||||| ||| | | ||||| || || | | || ||
Sbjct 88242 ATGCCCTCCTTATCCTGAATCTTGGCTTTGACATTTTCAATCGTATCAGAAGCCTCTACC 88301
Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|||| || | ||| ||||| ||||| ||||| ||||| |||||||||
Sbjct 88302 TCCAAAGTGATCGTCTTGCCAGTCAGCGTTTTGACAAATATCTGCATG 88349
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 114241 TACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTT 114300
|||| || | || |||||||||||||| || ||||| ||||| ||||| ||| |||
Sbjct 88547 TACCCGCAAAAATAAGACGCTGTTGGTCAGGGGGAATACCTTCCTTGTCCTGAATTTTTG 88606
Query 114301 GTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360
|| | | ||||| || || | | ||| || |||| || | |||||||| ||||
Sbjct 88607 CCTTCACATTTTCAATTGTATCTGATGCTTCAACCTCCAACGTTATAGTTTTGCCAGTCA 88666
Query 114361 GAGTTTTTACAAAAATCTGCATG 114383
||||| |||||||||||||||
Sbjct 88667 ACGTTTTCACAAAAATCTGCATG 88689
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 114242 ACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTG 114301
|||||| |||| || || || || ||||| ||||||||||| || || ||||||
Sbjct 89439 ACCAGCAAAGATTAGGCGTTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATCTTAGC 89498
Query 114302 TTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAG 114361
||||| | |||| ||| || | | ||| || |||| || | ||||||||||||||
Sbjct 89499 TTTTACATTCTCAATGGTATCAGAAGCTTCCACTTCCAACGTTATAGTTTTGCCGGTCAG 89558
Query 114362 AGTTTTTACAAAAATCTGCAT 114382
||||| ||||| || |||||
Sbjct 89559 TGTTTTGACAAAGATTTGCAT 89579
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420104814398136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |