Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24]
5,778 sequences; 75,392,092 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq22 93.3 5e-14
seq4722 89.7 6e-13
seq751 86.0 7e-12
>seq22
Length=171845
Score = 93.3 bits (102), Expect = 5e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
|||||||| | |||| ||| |||||||||||||| |||| ||| || || | || ||
Sbjct 88140 ACCAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCAGACAGTGTGCGGCCATCTTCC 88199
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
| |||||| || || || || | ||| || || || | ||| | || |||||| ||| ||
Sbjct 88200 AACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCTGGTGGGATGCCCTCCTTATCC-TG 88258
Query 42120 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178
| | || | ||||| | | | ||| || | || || || | ||||| || ||
Sbjct 88259 AATCTTGGCTTTGACATTTTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATCGTCTT 88318
Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| || ||||| || ||||| || |||||
Sbjct 88319 GCCAGTCAGCGTTTTGACAAATATCTGCAT 88348
>seq4722
Length=719
Score = 89.7 bits (98), Expect = 6e-13
Identities = 70/84 (83%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054
|| ||| || | |||| |||| | |||||||||| |||||| | ||||||||||| |
Sbjct 299 ATAAAAGATGTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGA 240
Query 57055 TACTCACCACTATACTACCGAGGA 57078
||||||||||||||||||||||||
Sbjct 239 TACTCACCACTATACTACCGAGGA 216
Score = 84.2 bits (92), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| |||| | |||||||||| |||||| | ||||||||||| ||||| ||||||
Sbjct 499 TCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTTACCACT 558
Query 57066 ATACTACCGAGGATTG 57081
||||||||||||| ||
Sbjct 559 ATACTACCGAGGACTG 574
>seq751
Length=30410
Score = 86.0 bits (94), Expect = 7e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057
|||||| |||| |||| | |||||||||| |||||| | ||||||||||| ||||
Sbjct 5468 AAAAATGCGCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 5409
Query 57058 TCACCACTATACTACCGAGGAT 57079
| ||||||||||||||||||||
Sbjct 5408 TTACCACTATACTACCGAGGAT 5387
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543173566455520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |