Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq22 93.3 5e-14 seq4722 89.7 6e-13 seq751 86.0 7e-12 >seq22 Length=171845 Score = 93.3 bits (102), Expect = 5e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | |||| ||| |||||||||||||| |||| ||| || || | || || Sbjct 88140 ACCAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCAGACAGTGTGCGGCCATCTTCC 88199 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | |||||| || || || || | ||| || || || | ||| | || |||||| ||| || Sbjct 88200 AACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCTGGTGGGATGCCCTCCTTATCC-TG 88258 Query 42120 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | | || | ||||| | | | ||| || | || || || | ||||| || || Sbjct 88259 AATCTTGGCTTTGACATTTTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATCGTCTT 88318 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || ||||| || ||||| || ||||| Sbjct 88319 GCCAGTCAGCGTTTTGACAAATATCTGCAT 88348 >seq4722 Length=719 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 || ||| || | |||| |||| | |||||||||| |||||| | ||||||||||| | Sbjct 299 ATAAAAGATGTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGA 240 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||||||||||||||||||||||| Sbjct 239 TACTCACCACTATACTACCGAGGA 216 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| | |||||||||| |||||| | ||||||||||| ||||| |||||| Sbjct 499 TCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTTACCACT 558 Query 57066 ATACTACCGAGGATTG 57081 ||||||||||||| || Sbjct 559 ATACTACCGAGGACTG 574 >seq751 Length=30410 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| |||| |||| | |||||||||| |||||| | ||||||||||| |||| Sbjct 5468 AAAAATGCGCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 5409 Query 57058 TCACCACTATACTACCGAGGAT 57079 | |||||||||||||||||||| Sbjct 5408 TTACCACTATACTACCGAGGAT 5387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543173566455520