Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24]
5,778 sequences; 75,392,092 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq22 89.7 5e-13
>seq22
Length=171845
Score = 89.7 bits (98), Expect = 5e-13
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || | ||||| || || ||||||||||| ||||| || | | ||||| | |||
Sbjct 88137 AGAACCAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCAGACAGTGTGCGGCCATCT 88196
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| | |||||| |||||| |||| | || || || || || || || || || || ||
Sbjct 88197 TCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCTGGTGGGATGCCCTCCTTATCC 88256
Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| | | || ||||| ||| || | |||||| || || || || | ||| | ||
Sbjct 88257 TG-AATCTTGGCTTTGACATTTTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATCGT 88315
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||||| |||| ||||| || || || |||||
Sbjct 88316 CTTGCCAGTCAGCGTTTTGACAAATATCTGCAT 88348
Score = 86.0 bits (94), Expect = 6e-12
Identities = 105/141 (74%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|||||| |||| || ||||||||||| || ||||||||||| || ||||| | | |||||
Sbjct 88884 CCGGCAAAAATAAGTCGCTGCTGGTCCGGCGGAATTCCTTCCTTGTCTTG-AATCTTTGC 88942
Query 64364 TTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAA 64422
||| ||| || | || ||| || || ||||| | || | || || || ||||
Sbjct 88943 TTTAACATTTTCGATAGTGTCAGAAGCCTCAACTTCCAAGGTGATCGTTTTACCAGTCAG 89002
Query 64423 AGTTTTTACGAAAATTTGCAT 64443
||| ||||| || ||||||||
Sbjct 89003 AGTCTTTACAAATATTTGCAT 89023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499608713154320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |