Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq59 95.1 1e-14 seq22 93.3 4e-14 >seq59 Length=128137 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 138473 TACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTT 138532 |||| | | | || || |||||||| |||||||| || ||||| ||||| |||||| Sbjct 71870 TACCAGCAAATATAAGGCGCTGTTGATCCGGAGGGATGCCTTCCTTGTCTTGGATTTTAG 71929 Query 138533 GTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592 || | | ||| | ||||| | ||| |||||||| | || | ||||||||||||| Sbjct 71930 CCTTAACATTTTCAATTGTGTCTGACGATTCCACCTCAAGTGTAATTGTTTTACCAGTCA 71989 Query 138593 GAGTTTTTACAAAAATCTGCAT 138614 |||||| |||||||| ||||| Sbjct 71990 AAGTTTTAACAAAAATTTGCAT 72011 >seq22 Length=171845 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 138473 TACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTT 138532 |||||| | | || || ||||| |||||||| || || ||||| ||||| ||| | ||| Sbjct 88882 TACCGGCAAAAATAAGTCGCTGCTGGTCCGGCGGAATTCCTTCCTTGTCT-TGAATCTTT 88940 Query 138533 GTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTC 138591 | ||||| | ||| | ||||| | | ||| || || | || | ||||||||||||| Sbjct 88941 GCTTTAACATTTTCGATAGTGTCAGAAGCCTCAACTTCCAAGGTGATCGTTTTACCAGTC 89000 Query 138592 AGAGTTTTTACAAAAATCTGCAT 138614 ||||| |||||||| || ||||| Sbjct 89001 AGAGTCTTTACAAATATTTGCAT 89023 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 138473 TACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTT 138532 |||| | | | || |||||||||||||| || || |||||||| ||||| ||| ||||| Sbjct 88547 TACCCGCAAAAATAAGACGCTGTTGGTCAGGGGGAATACCTTCCTTGTC-CTGAATTTTT 88605 Query 138533 G-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTC 138591 | || | | ||| | || || | | || ||||| | ||| | ||||| |||||| Sbjct 88606 GCCTTCACATTTTCAATTGTATCTGATGCTTCAACCTCCAACGTTATAGTTTTGCCAGTC 88665 Query 138592 AGAGTTTTTACAAAAATCTGCATG 138615 | ||||| ||||||||||||||| Sbjct 88666 AACGTTTTCACAAAAATCTGCATG 88689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496226557448160