Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq22 122 8e-23 >seq22 Length=171845 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||||| | || |||||||||||||||||||| || | Sbjct 88122 CCACCACGAAGACGGAGAACCAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCAGAC 88181 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || | ||| ||||| || | |||||||| || ||||| || || Sbjct 88182 AGTGTGCGGCCATCTTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCTGGTGGG 88241 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||| ||| ||| | | || |||| | ||| | || || | | ||| || Sbjct 88242 ATGCCCTCCTTATCC-TGAATCTTGGCTTTGACATTTTCAATCGTATCAGAAGCCTCTAC 88300 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| ||||| ||||| ||||| ||||| ||||||||| Sbjct 88301 CTCCAAAGTGATCGTCTTGCCAGTCAGCGTTTTGACAAATATCTGCATG 88349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475466456954720