Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq22 102 7e-17 seq546 95.1 1e-14 >seq22 Length=171845 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 45215 TCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTAC 45274 ||| ||||||||||||||||| ||||| || |||||||| ||| ||| | ||| | Sbjct 88898 TCGCTGCTGGTCCGGCGGAATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTTTCGAT 88957 Query 45275 GGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAAT 45334 ||||| |||| ||| ||||| | || | |||||| || || ||||| |||||||| || Sbjct 88958 AGTGTCAGAAGCCTCAACTTCCAAGGTGATCGTTTTACCAGTCAGAGTCTTTACAAATAT 89017 Query 45335 TTGCAT 45340 |||||| Sbjct 89018 TTGCAT 89023 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAAT 45194 ||| || || || || ||||| ||||| || || ||| || | | ||| ||||| Sbjct 88145 ATGAAGTGTGGACTCTTTTTGAATATTGTAGTCA--GACAGTGTGCGGCCATCTTCCAAC 88202 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || ||||| || | ||||||||||| || || || || ||||| || ||||| ||||| Sbjct 88203 TGCTTTCCGGCAAAAATCAATCGTTGTTGATCTGGTGGGATGCCCTCCTTATCCTGAATC 88262 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || ||||| ||| | || || |||| ||| || || | ||| | ||| ||||| Sbjct 88263 TTGGCTTTGACATTTTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATCGTCTTGCCA 88322 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| ||||| || ||||| Sbjct 88323 GTCAGCGTTTTGACAAATATCTGCAT 88348 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275 |||||||| ||||| ||||||||||| ||||| ||||| || ||| | || | | Sbjct 89455 CGTTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATCTTAGCTTTTACATTCTCAATG 89514 Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335 || || |||| || ||||| | || | ||||||||||| || ||||| ||||| ||| Sbjct 89515 GTATCAGAAGCTTCCACTTCCAACGTTATAGTTTTGCCGGTCAGTGTTTTGACAAAGATT 89574 Query 45336 TGCATC 45341 |||||| Sbjct 89575 TGCATC 89580 >seq546 Length=41299 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 ||||| | || | || |||||| || ||||||||||||||||| || |||||||| | Sbjct 26451 CCTGCAAAAATGAGTCTTTGCTGATCAGGCGGAATGCCTTCTTTGTCCTGAATTTTAGAT 26510 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 || | ||| | || || || | || ||||| ||||| | ||||||||||||| | Sbjct 26511 TTTACATTTTCGATAGTATCAGATGCTTCTACTTCAAGAGTGATTGTTTTGCCGGTTAAA 26570 Query 45321 GTTTTTACAAAAATTTGCAT 45340 ||||| ||||| || ||||| Sbjct 26571 GTTTTAACAAATATCTGCAT 26590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451970554068880