Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24]
5,778 sequences; 75,392,092 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq22 102 7e-17
seq546 95.1 1e-14
>seq22
Length=171845
Score = 102 bits (112), Expect = 7e-17
Identities = 98/126 (78%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 45215 TCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTAC 45274
||| ||||||||||||||||| ||||| || |||||||| ||| ||| | ||| |
Sbjct 88898 TCGCTGCTGGTCCGGCGGAATTCCTTCCTTGTCTTGAATCTTTGCTTTAACATTTTCGAT 88957
Query 45275 GGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAAT 45334
||||| |||| ||| ||||| | || | |||||| || || ||||| |||||||| ||
Sbjct 88958 AGTGTCAGAAGCCTCAACTTCCAAGGTGATCGTTTTACCAGTCAGAGTCTTTACAAATAT 89017
Query 45335 TTGCAT 45340
||||||
Sbjct 89018 TTGCAT 89023
Score = 96.9 bits (106), Expect = 3e-15
Identities = 146/206 (71%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAAT 45194
||| || || || || ||||| ||||| || || ||| || | | ||| |||||
Sbjct 88145 ATGAAGTGTGGACTCTTTTTGAATATTGTAGTCA--GACAGTGTGCGGCCATCTTCCAAC 88202
Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254
|| ||||| || | ||||||||||| || || || || ||||| || ||||| |||||
Sbjct 88203 TGCTTTCCGGCAAAAATCAATCGTTGTTGATCTGGTGGGATGCCCTCCTTATCCTGAATC 88262
Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314
|| ||||| ||| | || || |||| ||| || || | ||| | ||| |||||
Sbjct 88263 TTGGCTTTGACATTTTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATCGTCTTGCCA 88322
Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || ||||| ||||| || |||||
Sbjct 88323 GTCAGCGTTTTGACAAATATCTGCAT 88348
Score = 87.8 bits (96), Expect = 2e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275
|||||||| ||||| ||||||||||| ||||| ||||| || ||| | || | |
Sbjct 89455 CGTTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATCTTAGCTTTTACATTCTCAATG 89514
Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335
|| || |||| || ||||| | || | ||||||||||| || ||||| ||||| |||
Sbjct 89515 GTATCAGAAGCTTCCACTTCCAACGTTATAGTTTTGCCGGTCAGTGTTTTGACAAAGATT 89574
Query 45336 TGCATC 45341
||||||
Sbjct 89575 TGCATC 89580
>seq546
Length=41299
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260
||||| | || | || |||||| || ||||||||||||||||| || |||||||| |
Sbjct 26451 CCTGCAAAAATGAGTCTTTGCTGATCAGGCGGAATGCCTTCTTTGTCCTGAATTTTAGAT 26510
Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320
|| | ||| | || || || | || ||||| ||||| | ||||||||||||| |
Sbjct 26511 TTTACATTTTCGATAGTATCAGATGCTTCTACTTCAAGAGTGATTGTTTTGCCGGTTAAA 26570
Query 45321 GTTTTTACAAAAATTTGCAT 45340
||||| ||||| || |||||
Sbjct 26571 GTTTTAACAAATATCTGCAT 26590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451970554068880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |