Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq867 176 2e-38 seq283 170 8e-37 seq642 150 7e-31 seq22 107 8e-18 seq59 104 9e-17 >seq867 Length=25794 Score = 176 bits (194), Expect = 2e-38 Identities = 407/608 (67%), Gaps = 9/608 (1%) Strand=Plus/Plus Query 450913 AGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAA 450972 ||||||||||||||| | || || || | | ||||| |||||||| ||| |||| Sbjct 13699 AGCAATTGGAATTGACTTAGGTACTACGTATAGTTGTGTTGGTGTTTATCAATATGGTCG 13758 Query 450973 TGTAGAAATTATAGCAAATGACCAAGG-ATCACGAACTACTCCTTCATGGGTAAGTTTTA 451031 |||||||| ||||| ||||||||||| | || |||||| || |||| || |||| Sbjct 13759 AGTAGAAATAATAGCTAATGACCAAGGCAACAA-AACTACGCCATCATATGTTGCATTTA 13817 Query 451032 CGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAA 451089 |||| ||| | | | || | | || | ||||| ||| | ||| | | Sbjct 13818 CGGAAAGTGAACGTTTAATTGGTGATTCAGCATATGATCAA--GTAGCTCGTAATCCAGA 13875 Query 451090 AAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACA 451149 ||| ||| | | | ||||| || || || || | || | ||| | || || Sbjct 13876 AAATACAATTTTTTCAATAAAACGATTGATAGGACGAAAGTTAAACGATCCAAAAGTTCA 13935 Query 451150 AAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCA 451209 | |||| | || | | | | | ||| | | |||| || || || || | Sbjct 13936 AGAAGATATGCGTTTATGGCCATTTAAAGTAATTTCTAAAAATGGCAAACCAGCAATCGA 13995 Query 451210 AGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCT 451269 |||| | | ||| |||| ||| ||| |||| |||||||||||||||||| || | Sbjct 13996 AGTAGAATTTAAGAATGAACAACGAACATTTACTCCAGAAGAAATTTCATCTATGATTTT 14055 Query 451270 TACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAAT 451329 | |||||||||||||||||| ||| | | | || | | | || | | | ||||| || Sbjct 14056 GAGTAAAATGAAAGAAACAGCTGAAATTTTTTTGGGATTTACTGTAAGTAAAGCAGTTAT 14115 Query 451330 TACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATAT 451389 || || || || ||||| |||||| || || ||||| |||||||| || ||| ||| Sbjct 14116 CACAGTACCAGCATATTTTAATGATAGTCAGCGACAAGCGACTAAAGACGCTGGAATTAT 14175 Query 451390 TGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 ||||| ||| | || | |||||||||||||| || |||||||| || |||||||||| Sbjct 14176 CGCTGGATTAGACGTCTTGCGAATTATTAATGAGCCAACAGCAGCAGCATTAGCATATGG 14235 Query 451450 ACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGG 451509 || | || ||| || | | || ||||| || | |||||||| |||| ||||| Sbjct 14236 CCTTGATAA---GAAATTAAAAAATGATCAAAATGTTCTCATATTTGATCTTGGAGGAGG 14292 Query 451510 AACTCATG 451517 | |||| Sbjct 14293 TATGCATG 14300 Score = 138 bits (152), Expect = 4e-27 Identities = 172/231 (74%), Gaps = 10/231 (4%) Strand=Plus/Plus Query 451989 TAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTT 452048 ||||||||||||| || || || ||||| || |||||||||||||||||||| || | Sbjct 15677 TAAATCCTGATGAGGCAGTAGCTTATGGCGCAGCAGTTCAAGCAGCTATTCTCACTGACG 15736 Query 452049 CAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAG 452108 | ||||| ||| | ||| | || |||| ||||| ||||| || ||| | || Sbjct 15737 TACGTGATGCAAATGTGAAAGACGTGTTGCTAGTTGATGTGACACCACTTTCTTTAGGTA 15796 Query 452109 TTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTA 452168 ||||||| ||||||||| ||||||||| ||||||| ||||| ||| ||||| |||| Sbjct 15797 TTGAAACTGCTGGTGGAGTGATGACTACTTTAATTGAACGAAATACTCGAATTCC-TGTA 15855 Query 452169 AAAAGAGTCAAACA--TTTAGTACA---GCAAGTGATAACCAACCAGGTGT 452214 |||| | ||||| | |||| |||| ||| |||| |||||||| || Sbjct 15856 AAAACA-TCAAAAATGTTTACTACATTTTCAA---ATAATCAACCAGGAGT 15902 >seq283 Length=65264 Score = 170 bits (188), Expect = 8e-37 Identities = 437/659 (66%), Gaps = 16/659 (2%) Strand=Plus/Plus Query 451840 AATGAAACCTGTTGATCAAGTATTACATGATTCTAAAATTAGTAAAGATAAAATTGATGA 451899 |||| | || || || ||| || | |||| | ||||| ||| | | || | | || Sbjct 45835 AATGGATCCAGTAGAAAAAGCTTTGCGTGATGCAAAAATGGATAAGGCTCAAGTGCACGA 45894 Query 451900 AATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCA--AGATATGTT--GTCTT 451955 ||||| || || || || ||||| || ||||||||| | || || || || | ||| Sbjct 45895 CATTGTTCTAGTTGGTGGCTCTACTCGTATTCCTAAAGTGCAGAAGTTACTTTCCGACTT 45954 Query 451956 CTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATG 452015 || | | || ||| | | |||||| | ||||| ||||||||||||||||||| Sbjct 45955 TTTCTCT----GGCAAAGAGTTGAATAAGAGTATTAATCCCGATGAAGCTGTTGCATATG 46010 Query 452016 GTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGA---TGAAAAATTAGGAGATA 452072 | || ||||||| ||||||||| || | || |||| | |||| | ||| Sbjct 46011 GGGCATCAGTTCAGGCAGCTATTTTATCTGG---AGATAAGTCTGAAGCTGTGCAGGATC 46067 Query 452073 TTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGA 452132 |||| | ||||||| | ||||| || | ||| ||||||| ||||| || | |||| Sbjct 46068 TTCTACTTCTAGATGTCGCTCCTCTCTCCTTGGGAATTGAAACTGCTGGCGGTGTAATGA 46127 Query 452133 CTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAG 452192 || | ||||| || ||| | || || ||||| | ||||| || | ||| Sbjct 46128 CTGCCCTCATTAAGCGTAATACTACCATCCCAACTAAAACGTCCCAAACCTTCACTACGT 46187 Query 452193 CAAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACAC 452252 || ||||| || ||||| ||||| || | |||||| || || |||||||| Sbjct 46188 ATTCCGACAACCAGCCTGGTGTGTTGATTCAGGTTTATGAAGGTGAGCGAGCAATGACTA 46247 Query 452253 GAGATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAA 452312 ||| |||||| || || |||| | || || || ||| || | || Sbjct 46248 AAGACAATAATCTGCTTGGTAAATTCGAGTTGTCTGGAATCCCACCTGCTCCCCGAGGTG 46307 Query 452313 CTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAG 452372 |||||||||||| | || | |||| ||||||| || ||||| || ||||| ||| Sbjct 46308 TCCCTCAAATTGAAGTAACGTTTGATATTGATGCGAACGGTATCCTGAATGTATCTGCTC 46367 Query 452373 TTGAAAAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTA 452431 || |||||| |||| ||| ||||| || ||||| ||||| |||||||| | | | Sbjct 46368 AAGACAAATCAACTGGCAAA-CAGAACAAGATTACCATTACGAATGATAAGGGCAGGCTG 46426 Query 452432 TCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGA 452490 || || || || || || | |||||| | ||||| || || | || | |||||||| Sbjct 46427 TCGAAGGATGAAATCGAGAGGATGGTACAGGAAGCTGAGAAGTATAAAGCAGATGATGA 46485 Score = 87.8 bits (96), Expect = 7e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 || || ||| | || || || |||||||| |||||| | || || || ||||| || ||| Sbjct 45148 GACGCTGTAGTCACAGTCCCTGCTTATTTTAATGATTCCCAGCGTCAGGCAACAAAGGAT 45207 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 |||| ||||| ||| | || || | || ||||||||||||||||||||||| || Sbjct 45208 TCAGGTGCCATTGCGGGTCTGAACGTGTTGCGTATTATTAATGAACCTACAGCAGCAGCA 45267 Query 451439 CTAGCATATGG 451449 | || ||||| Sbjct 45268 ATTGCCTATGG 45278 >seq642 Length=34890 Score = 150 bits (166), Expect = 7e-31 Identities = 176/237 (74%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 451232 AAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCA 451291 ||||| || ||||| |||||||||||| |||||||||||||||||||||| | | || Sbjct 16617 AAAACCTTCGCTCCAGAAGAAATTTCAGCTATGGTTCTTACTAAAATGAAGAATATTGCT 16558 Query 451292 GAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAAT 451351 ||| ||| | || ||||| |||| | | || || |||||||| |||||| Sbjct 16557 GAATCGTATTTGGGAAAAGAAGTTAAGCATGCTATCGTGACAGTGCCCGCTTACTTCAAT 16498 Query 451352 GATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGA 451411 ||||| ||||| || || || |||||||| || |||||| || | ||||| | ||| Sbjct 16497 GATGCGCAACGTCAGGCTACCAAAGATGCGGGTTCTATTGCAGGCCTTAATGTCGTGCGA 16438 Query 451412 ATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAA 451468 || || |||||||| || || |||||| | |||||||| |||| || ||||||| Sbjct 16437 ATAATCAATGAACCCACGGCTGCTGCTATTGCATATGGTCTAGACAA---AAAAGAA 16384 Score = 87.8 bits (96), Expect = 7e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 451481 aaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAA 451540 || ||| | || || ||| ||||||| || ||| |||| ||| | ||| |||| || Sbjct 16088 AACATTCTCGTTTTCGATCTTGGTGGCGGCACTTTTGATGTTTCATTGCTTACAATCGAT 16029 Query 451541 GATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATT 451600 |||| || || ||||||| ||||| | ||||||||||||| | || ||||||||| || Sbjct 16028 AATGGCGTTTTCGAAGTAATAGCAACAAGTGGTGATACTCATTTGGGTGGTGAAGATTTT 15969 Query 451601 GAT 451603 ||| Sbjct 15968 GAT 15966 >seq22 Length=171845 Score = 107 bits (118), Expect = 8e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||| |||||||| || || || ||| | || || || | ||| Sbjct 88348 ATGCAGATATTTGTCAAAACGCTGACTGGCAAGACGATCACTTTGGAGGTAGAGGCTTCT 88289 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | ||| || ||||| |||||||| || || || || |||||| Sbjct 88288 GATACGATTGAAAATGTCAAAGCCAAGATTCAGGATAAGGAGGGCATCCCACCAGATCAA 88229 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| || ||||| | || || || | |||||||| | || || | || || ||| Sbjct 88228 CAACGATTGATTTTTGCCGGAAAGCAGTTGGAAGATGGCCGCACACTGTCTGACTACAAT 88169 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | || || | |||||||| || || Sbjct 88168 ATTCAAAAAGAGTCCACACTTCATTTGGT 88140 Score = 107 bits (118), Expect = 8e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||||||||||||||| ||||| || || || |||||| | || Sbjct 89933 ATGCAAATTTTCGTGAAAACACTGACTGGTAAGACTATCACCCTCGAGGTTGAAGCTTCC 89874 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | || ||||| |||||||||||||| ||||| |||||||| Sbjct 89873 GACACTATCGAAAATGTGAAGGCCAAAATCCAAGATAAGGAAGGTATTCCACCTGATCAG 89814 Query 391170 CAACGTTTAATTTT 391183 || || ||||||| Sbjct 89813 CAGCGCCTAATTTT 89800 Score = 93.3 bits (102), Expect = 2e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||||||||| || |||||||| || | || || ||| | ||| Sbjct 89579 ATGCAAATCTTTGTCAAAACACTGACCGGCAAAACTATAACGTTGGAAGTGGAAGCTTCT 89520 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | ||| || ||||| ||||||||||| ||||| || ||||| Sbjct 89519 GATACCATTGAGAATGTAAAAGCTAAGATTCAGGATAAGGAAGGCATTCCACCGGATCAG 89460 Query 391170 CAACGTTTAATTTT 391183 ||||| |||| || Sbjct 89459 CAACGCCTAATCTT 89446 Score = 86.0 bits (94), Expect = 2e-11 Identities = 98/131 (75%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112 ||||||| || || || |||||||||||||| || || | || ||||| | ||||| Sbjct 89018 AATATTT--GTAAAGACTCTGACTGGTAAAACGATCACCTTGGAAGTTGAGGCTTCTGAC 88961 Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172 | || ||| | ||||| ||| |||||||| |||||||||||||| || || || || Sbjct 88960 ACTATCGAAAATGTTAAAGCAAAGATTCAAGACAAGGAAGGAATTCCGCCGGACCAGCAG 88901 Query 391173 CGTTTAATTTT 391183 || | ||||| Sbjct 88900 CGACTTATTTT 88890 >seq59 Length=128137 Score = 104 bits (114), Expect = 9e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| |||||||| ||||||||||||| ||||| ||||| || ||||| || Sbjct 72011 ATGCAAATTTTTGTTAAAACTTTGACTGGTAAAACAATTACACTTGAGGTGGAATCGTCA 71952 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | |||| ||||| ||||| |||||||| || ||||| |||||| Sbjct 71951 GACACAATTGAAAATGTTAAGGCTAAAATCCAAGACAAGGAAGGCATCCCTCCGGATCAA 71892 Query 391170 CAACG 391174 || || Sbjct 71891 CAGCG 71887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975572136332024