Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq867 286 3e-71 seq283 230 2e-54 seq14 100 2e-15 seq642 91.5 1e-12 >seq867 Length=25794 Score = 286 bits (316), Expect = 3e-71 Identities = 436/614 (71%), Gaps = 14/614 (2%) Strand=Plus/Minus Query 518107 TACAT--CATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG 518164 ||||| |||| | || || || | |||||| || || ||||| || || | | Sbjct 14307 TACATGGCATGCATACCTCCTCCAAGATCAAATATGAGAACATTTTGATCATTTTTTAAT 14248 Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || |||||||| ||||| || || || || || ||||| ||||||||||||| ||| || Sbjct 14247 TTCTTATCAAGGCCATATGCTAATGCTGCTGCTGTTGGCTCATTAATAATTCGCAAGACG 14188 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 | | ||||| || |||| || |||||||| ||||||| || ||| ||||||||| Sbjct 14187 TCTAATCCAGCGATAATTCCAGCGTCTTTAGTCGCTTGTCGCTGACTATCATTAAAATAT 14128 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACT-TCTTTACCAATATAAGCGCTTGCCGTTTG 518343 || || || || ||||| || | | |||| | | |||| | || | || |||| Sbjct 14127 GCTGGTACTGTGATAACTGCTTTACTTACAGTAAATCCCAAAAAAATTTCA-GCTGTTTC 14069 Query 518344 TTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGG--AATATTGCTTGGATTCA 518401 |||||||||||| |||||||| |||||||||| |||||| | ||| || ||| |||| Sbjct 14068 TTTCATTTTACTCAAAATCATAGATGAAATTTCTTCTGGAGTAAATGTTCGTTG--TTCA 14011 Query 518402 TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTA---ATAACTTTAAATGGC 518458 || | | || |||||| | |||||| ||| ||| || |||||||||||| Sbjct 14010 TTCTTAAATTCTACTTCGATTGCTGGTTTG---CCATTTTTAGAAATTACTTTAAATGGC 13954 Query 518459 CAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTT 518518 || | ||||||| |||||| || | || || || | || || || ||||||||| Sbjct 13953 CATAAACGCATATCTTCTTGAACTTTTGGATCGTTTAACTTTCGTCCTATCAATCGTTTT 13894 Query 518519 GCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATC 518578 |||||| ||||| ||||||| || |||||| | |||| ||| ||||| Sbjct 13893 ATTGAAAAAATTGTATTTTCTGGATTACGAGCTACTTGATCATATGCTGAATCACCAATT 13834 Query 518579 AGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTC 518638 | | |||| | || ||||||| |||||||||||| || || || ||||| ||||| Sbjct 13833 AAACGTTCACTTTCCGTAAATGCAACATATGATGGCGTAGTTTTGTTGCCTTGGTCATTA 13774 Query 518639 GCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAA 518698 || || ||||| ||| ||||| ||| | ||||| ||||||||| | || || ||||| Sbjct 13773 GCTATTATTTCTACTCGACCATATTGATAAACACCAACACAACTATACGTAGTACCTAAG 13714 Query 518699 TCAATACCAATAGC 518712 ||||| ||||| || Sbjct 13713 TCAATTCCAATTGC 13700 Score = 131 bits (144), Expect = 1e-24 Identities = 189/264 (72%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 517413 TAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGAT-TTTTTACAAGGAATT 517471 ||||| | | |||||||| |||| | || ||||| | | | ||| |||||||| |||||| Sbjct 15904 TAACTCCTGGTTGATTATTTGAAAATGTAGTAAACATTTTTGATGTTTTTACA-GGAATT 15846 Query 517472 GTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAA 517531 || |||| ||||| | | | ||||| | ||||| || ||||| | ||| | |||| Sbjct 15845 CGAGTATTTCGTTCAATTAAAGTAGTCATCACTCCACCAGCAGTTTCAATACCTAAAGAA 15786 Query 517532 AGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGA 517591 || || || ||||||||||| | | | || | ||| ||||| | || ||| Sbjct 15785 AGTGGTGTCACATCAACTAGCAACACGTCTTTCACATTTGCATCACGTACGTCAGTGAGA 15726 Query 517592 ATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTT 517651 ||||||||||||| || || ||||| || || || ||||||||||| | || | ||| Sbjct 15725 ATAGCTGCTTGAACTGCTGCGCCATAAGCTACTGCCTCATCAGGATTTATAGAATGATTA 15666 Query 517652 AGTTTTTTACCATTGAAAAAATTT 517675 || | |||||| | | ||||||| Sbjct 15665 AGCTCTTTACCTATAAGAAAATTT 15642 Score = 89.7 bits (98), Expect = 4e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 322244 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 322303 || ||||| | |||||||| ||||| |||||||| ||| | || ||||| || || Sbjct 14235 CCATATGCTAATGCTGCTGCTGTTGGCTCATTAATAATTCGCAAGACGTCTAATCCAGCG 14176 Query 322304 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 322363 || | ||| || ||| ||||||| ||| |||||||||||||||||||| || Sbjct 14175 ATAATTCCAGCGTCTTTAGTCGCTTGTCGCTGACTATCATTAAAATATGCTGGTACTGTG 14116 Query 322364 ATAACTGCTTTA 322375 |||||||||||| Sbjct 14115 ATAACTGCTTTA 14104 >seq283 Length=65264 Score = 230 bits (254), Expect = 2e-54 Identities = 514/767 (67%), Gaps = 10/767 (1%) Strand=Plus/Minus Query 517174 CATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTT 517233 ||| ||||| |||| ||| | || | || || || ||| ||||| ||||| || || Sbjct 46450 CATCCTCTCGATTTCATCCTTCGACAGCCTGCCCTTATCATTCGTAATGGTAATCTTGTT 46391 Query 517234 GGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATC 517293 |||| |||||||| || |||| ||||| || ||||| || ||||| | ||| Sbjct 46390 CTGTTTGCCAGTTGATTTGTCTTGAGCAGATACATTCAGGATACCGTTCGCATCAATATC 46331 Query 517294 AAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAA 517353 ||| || ||||||||||||||||| |||| ||||||||||||| || ||| | || Sbjct 46330 AAACGTTACTTCAATTTGAGGGACACCTCGGGGAGCAGGTGGGATTCCAGACAACTCGAA 46271 Query 517354 TGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGT 517413 | | || || |||||| |||||||| | | ||| ||||| || ||| || || Sbjct 46270 TTTACCAAGCAGATTATTGTCTTTAGTCATTGCTCGCTCACCTTCATAAACCTGAATCAA 46211 Query 517414 AACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGT 517473 || ||| || || || ||||| || || || | ||| ||||| || || || Sbjct 46210 CACACCAGGCTGGTTGTCGGAATACGTAGTGAAGGTTTGGGACGTTTTAGTTGGGATGGT 46151 Query 517474 TGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAG 517533 || || | | ||| | ||||| | ||| || || ||||| | || | || || Sbjct 46150 AGTATTACGCTTAATGAGGGCAGTCATTACACCGCCAGCAGTTTCAATTCCCAAGGAGAG 46091 Query 517534 AGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAAT 517593 ||||| |||||| | || | || || || | |||| | | ||| | ||| Sbjct 46090 AGGAGCGACATCTAGAAGTAGAAGATCCTGCACAGCTTCAGACTTATCTCCAGATAAAAT 46031 Query 517594 AGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAG 517653 |||||| |||| | || |||||||||||||||||||| ||||||| | | | ||| | Sbjct 46030 AGCTGCCTGAACTGATGCCCCATATGCAACAGCTTCATCGGGATTAATACTCTTATTCAA 45971 Query 517654 TTTTTTACCATTGAAAAAATTTGAAAG-AAGTTGTCTTACCTTAGGAATACGAGATGATC 517712 | ||| ||| |||||| | ||||| || || | || ||||||||||||| || | Sbjct 45970 CTCTTTGCCAGAGAAAAAGTCGGAAAGTAACTTCT-GCACTTTAGGAATACGAGTAGAGC 45912 Query 517713 CTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTT 517772 | ||||||| ||||| || ||||| || | ||||||| ||||| ||| ||| ||| Sbjct 45911 CACCAACTAGAACAATGTCGTGCACTTGAGCCTTATCCATTTTTGCATCACGCAAAGCTT 45852 Query 517773 TTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTC 517832 |||| || || || | | | ||||| |||| || || ||||| || || | Sbjct 45851 TTTCTACTGGATCCATTGTTGAGCGGAACAAATCTGCGCAGAGCTCTTCAAAACGGGCAC 45792 Query 517833 TAGTAAGA---GTGACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTA 517888 ||||| | ||| || || || || || ||||||| ||||| | || || | Sbjct 45791 GAGTAATACTTGTG----TAGAAGTCGATACCCTCGAACAGTGAATCGATCTCGATACTT 45736 Query 517889 GTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGT 517935 | ||| | ||| || | | ||||| || | ||||||||| || Sbjct 45735 GCTTGTGACGAGCTGGACAACGTCCGTTTTGCTCTTTCACATGCAGT 45689 Score = 93.3 bits (102), Expect = 3e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 |||||||| | |||||| |||| || || || || |||||||||||||| | ||| || Sbjct 45290 TTTTTATCTAAACCATAGGCAATTGCTGCTGCTGTAGGTTCATTAATAATACGCAACACG 45231 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||| ||||| |||| ||| || || || || | || ||||| |||||||| Sbjct 45230 TTCAGACCCGCAATGGCACCTGAATCCTTTGTTGCCTGACGCTGGGAATCATTAAAATAA 45171 Query 518285 GCAGGAACAGT 518295 ||||| || || Sbjct 45170 GCAGGGACTGT 45160 >seq14 Length=197575 Score = 100 bits (110), Expect = 2e-15 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 668854 AGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACG 668913 ||| || ||||| ||||| ||||||||||||||||||||||| || ||| | || || || Sbjct 69556 AGGAAAGGAAGGCCGTATCAGAGGAAATTTGATGGGAAAACGAGTAGATTTTTCAGCTCG 69497 Query 668914 TACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTTATTAT 668973 || || ||||| | ||||| ||| | | | || ||| ||||| || | || ||| Sbjct 69496 AACTGTAATTACACCAGATCCAAATTTACCCATAGATACAGTCGGTGTACCGCGTACTAT 69437 Query 668974 TGCTAAAAATCTTACTTTTGACGAAATTGTAAC 669006 |||| ||||| | || ||| |||||||| || Sbjct 69436 TGCTCAAAATATGACATTTCCAGAAATTGTCAC 69404 >seq642 Length=34890 Score = 91.5 bits (100), Expect = 1e-12 Identities = 166/242 (69%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 518447 ACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 518506 || ||||| ||||| | | | |||||| ||||| || | || | |||| ||| Sbjct 16732 ACCTTAAAAGGCCAATGTCTAATATCTTGCTGAACTTTTGGATCCGAGTATTCTCGACCG 16791 Query 518507 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCT 518566 || || ||||| |||| || | ||||| |||||| | | |||| || ||| Sbjct 16792 ATCAAACGTTTAACATCGAAGACTGTATTTTCTGGATTGGTAGTTAACTGATTCTTTGCT 16851 Query 518567 GCATCTCCAATCAGATGTTC-----TGTCTCTG-TAAATGAAACATATGATGGAGTTGTG 518620 ||||| ||||||||| |||| | || || | |||| |||||||||||| || | Sbjct 16852 GCATCACCAATCAGACGTTCACCACTTTCGCTCATGAATGCAACATATGATGGTGTAATT 16911 Query 518621 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 518680 | ||||| || ||||| || |||||||| ||| ||||||| | || || |||||| Sbjct 16912 CTGTTACCCTGTTCATTAGCTATAATTTCCACTCGTCCATTTTTATAAACGCCGACACAA 16971 Query 518681 CT 518682 || Sbjct 16972 CT 16973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780535676607268