Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq283 307 1e-78 seq642 152 7e-32 seq867 145 1e-29 seq96 82.4 1e-10 >seq283 Length=65264 Score = 307 bits (340), Expect = 1e-78 Identities = 587/862 (68%), Gaps = 2/862 (0%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || |||||||||| || || || || |||||| | || || || || ||||| Sbjct 46485 TCATCATCTGCTTTATACTTCTCAGCTTCCTGTACCATCCTCTCGATTTCATCCTTCGAC 46426 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTT-TTCGGATTTACCCGAGGCCTTATCTTC 6687 | || ||||||||||||||||| |||||||| ||| | ||| || | | || |||| Sbjct 46425 AGCCTGCCCTTATCATTCGTAATGGTAATCTTGTTCTG-TTTGCCAGTTGATTTGTCTTG 46367 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 |||| |||||||| ||||| || ||||||| ||| ||| |||| | |||||| || Sbjct 46366 AGCAGATACATTCAGGATACCGTTCGCATCAATATCAAACGTTACTTCAATTTGAGGGAC 46307 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||| | || || | ||| || || | || || ||| ||||||| | | | || || | Sbjct 46306 ACCTCGGGGAGCAGGTGGGATTCCAGACAACTCGAATTTACCAAGCAGATTATTGTCTTT 46247 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGC 6867 | | | || ||||||||||| || | ||| ||| |||| || || || Sbjct 46246 AGTCATTGCTCGCTCACCTTCATAAACCTGAATCAACACACCAGGCTGGTTGTCGGAATA 46187 Query 6868 CGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGT 6927 ||| | |||| |||| | |||| ||| || || ||||| | | ||| | | || Sbjct 46186 CGTAGTGAAGGTTTGGGACGTTTTAGTTGGGATGGTAGTATTACGCTTAATGAGGGCAGT 46127 Query 6928 CATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAG 6987 ||| | ||| || |||||| | ||| | || ||||| | || || | |||| || Sbjct 46126 CATTACACCGCCAGCAGTTTCAATTCCCAAGGAGAGAGGAGCGACATCTAGAAGTAGAAG 46067 Query 6988 GTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTA 7047 || || |||| ||| | || || | ||| || || || || || | ||||| || Sbjct 46066 ATCCTGCACAGCTTCAGACTTATCTCCAGATAAAATAGCTGCCTGAACTGATGCCCCATA 46007 Query 7048 TGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGA 7107 ||| || || |||||||| ||||| | ||||||| ||||| || ||| | || || Sbjct 46006 TGCAACAGCTTCATCGGGATTAATACTCTTATTCAACTCTTTGCCAGAGAAAAAGTCGGA 45947 Query 7108 TAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCAC 7167 | | | || | ||| || || || || || ||||| || | ||| || || | ||| Sbjct 45946 AAGTAACTTCTGCACTTTAGGAATACGAGTAGAGCCACCAACTAGAACAATGTCGTGCAC 45887 Query 7168 TTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACG 7227 || | ||||| || |||| || || | | |||||| || || ||||| | || Sbjct 45886 TTGAGCCTTATCCATTTTTGCATCACGCAAAGCTTTTTCTACTGGATCCATTGTTGAGCG 45827 Query 7228 GAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAAC 7287 |||||| || || || || |||||||| ||||| ||||| ||| ||||| || | Sbjct 45826 GAACAAATCTGCGCAGAGCTCTTCAAAACGGGCACGAGTAATACTTGTGTAGAAGTCGAT 45767 Query 7288 GCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTT 7347 || ||| | | ||||| || || || ||| ||||| || || ||||| || || Sbjct 45766 ACCCTCGAACAGTGAATCGATCTCGATACTTGCTTGTGACGAGCTGGACAACGTCCGTTT 45707 Query 7348 TGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTT 7407 ||| | ||||| || || || || || ||||||||||| || || || | || || Sbjct 45706 TGCTCTTTCACATGCAGTACGCAACCGCCGAAGGGCACGAGGATTCGAGGCCAAGTCCTT 45647 Query 7408 CTTATGTTTACGTTTAAACTCT 7429 |||||||||||||||||| ||| Sbjct 45646 CTTATGTTTACGTTTAAATTCT 45625 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACA 7653 || ||||| | ||| || || || || || || || ||||||||||||||||| || || Sbjct 45290 TTTTTATCTAAACCATAGGCAATTGCTGCTGCTGTAGGTTCATTAATAATACGCAACAC- 45232 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 |||||| || ||||| | | | ||| || || || || || || ||||| ||||| || Sbjct 45231 GTTCAGACCCGCAATGGCACCTGAATCCTTTGTTGCCTGACGCTGGGAATCATTAAAATA 45172 Query 7714 GGCCGGGACCGTTACGACCGCGTC 7737 || ||||| || || || ||||| Sbjct 45171 AGCAGGGACTGTGACTACAGCGTC 45148 >seq642 Length=34890 Score = 152 bits (168), Expect = 7e-32 Identities = 165/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GACA 7653 || || || ||||| || || ||||| || ||||| |||||||| || || || | |||| Sbjct 16388 TTTTTGTCTAGACCATATGCAATAGCAGCAGCCGTGGGTTCATTGATTATTCGCACGACA 16447 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 || ||||| ||||||| |||||||||| || || || ||||||| ||| || ||||| Sbjct 16448 -TTAAGGCCTGCAATAGAACCCGCATCTTTGGTAGCCTGACGTTGCGCATCATTGAAGTA 16506 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 || || || || |||| || | | | |||| || || | ||||||||| || |||| Sbjct 16507 AGCGGGCACTGTCACGATAGCATGCTTAACTTCTTTTCCCAAATACGATTCAGCAATATT 16566 Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 |||||||| ||||||||||| | |||||| ||||| Sbjct 16567 CTTCATTTTAGTAAGAACCATAGCTGAAATTTCTTC 16602 >seq867 Length=25794 Score = 145 bits (160), Expect = 1e-29 Identities = 402/609 (66%), Gaps = 18/609 (3%) Strand=Plus/Minus Query 7548 TACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGAC 7607 |||| || || || ||||| ||||| || || ||| | | | |||||||| || | Sbjct 14294 TACCTCCTCCAAGATCAAATATGAGAACATTTTGATCATTTTTTAATTTCTTATCAAGGC 14235 Query 7608 CGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCA 7666 | || || | || || || ||||| ||||||||||| || ||||| || | ||||| Sbjct 14234 CATATGCTAATGCTGCTGCTGTTGGCTCATTAATAATTCGCAAGAC-GTCTAATCCAGCG 14176 Query 7667 ATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTT 7726 ||| || | || ||||| ||||||||||| || ||| ||||| || || || || || Sbjct 14175 ATAATTCCAGCGTCTTTAGTCGCTTGTCGCTGACTATCATTAAAATATGCTGGTACTGTG 14116 Query 7727 ACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTA 7786 | || || | | || | || | | | ||| || | ||||||||||| | Sbjct 14115 ATAACTGCTTTACTTACAGTAAATCCCAAAAAAATTTCAGCTGTTTCTTTCATTTTACTC 14056 Query 7787 AGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGT--TTCACCGTTAAAATCAA 7844 | || ||| |||||||| ||||| | | ||| || ||||| |||| ||||| || | Sbjct 14055 AAAATCATAGATGAAATTTCTTCTGGAGTAAA-TG-TTCGTTGTTCATTCTTAAATTCTA 13998 Query 7845 CTTCAATCATGGGTTT---ATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCA 7901 |||| || ||||| || || | || || ||| | | ||| || Sbjct 13997 CTTCGATTGCTGGTTTGCCATTTTTAGAA------ATTACTTTAAATGGCCATAAACGCA 13944 Query 7902 TATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAA 7961 |||| ||||| || | | | || ||||||| ||| || | || ||| ||||| Sbjct 13943 TATCTTCTTGAACTTTTGGATCGTTTAACTTTCGTCCTATCAATCGTTTTATTGAAAAAA 13884 Query 7962 CTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCAT 8021 ||| |||| || || ||| ||| | | || | || || || | |||||| Sbjct 13883 TTGTATTTTCTGGATTACGAGCTACTTGATCATATGCTGAATCACCAATTAAACGTTC-- 13826 Query 8022 TATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAA 8081 | |||||||||| || || || ||||| || ||| || |||||||| || || || | Sbjct 13825 -ACTTTCCGTAAATGCAACATATGATGGCGTAGTTTTGTTGCCTTGGTCATTAGCTATTA 13767 Query 8082 TTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATAC 8141 ||||||| || | | ||| | || || || || |||||| || ||||| ||||| | Sbjct 13766 TTTCTACTCGACCATATTGATAAACACCAACACAACTATACGTAGTACCTAAGTCAATTC 13707 Query 8142 CGATTGCTT 8150 | ||||||| Sbjct 13706 CAATTGCTT 13698 Score = 104 bits (114), Expect = 3e-17 Identities = 308/468 (66%), Gaps = 9/468 (2%) Strand=Plus/Minus Query 7090 ACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGAC 7149 ||| |||||| | || || | | || |||||| || || || | || || ||||| || Sbjct 15410 ACCATTAAAAAATTCAGAAAGTAATTTTTGAATCTTTGGAATCCTCGTTGAACCACCAAC 15351 Query 7150 CAAAACGATTTCATTCACTTTC--GATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCG 7207 || || | |||||| | |||| | ||| | || | || || || ||||| Sbjct 15350 TAATACTACTTCATTAA-TTTCATGCTTTTTTAGTCGGGCATCTTCCAA-TGCATTTTCT 15293 Query 7208 ACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTA 7267 ||||||| | ||| |||||||| || || | ||| ||||| | || || | Sbjct 15292 ACAGGTTTTAATGTTTTTCGGAACAAATCACCGCATAATTCTTCAAATCTCGCTCGAGAT 15233 Query 7268 ATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCC 7327 || || | ||| |||||| ||| || || | ||| ||||| || |||| ||| | Sbjct 15232 ATTGAAGAATAAAAATCAGTGCCTTCATACAGACTATCTATTTCGATAGTTGCTTGAGTA 15173 Query 7328 GTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGC 7387 | ||||||||||| ||||| | ||||| | || ||||| || || | | ||| Sbjct 15172 GAGCTTGATAACGTTCGTTTTGCTCTTTCACATGTTGTACGTAATCGCCGTAATGAACGT 15113 Query 7388 GGGTTACCGGAAATATC-TTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAG 7446 || ||| | ||||| |||| | | |||||||||||| || | | ||| | ||| Sbjct 15112 GGACTACGTGTGATATCATTTCCTGT-TTTACGTTTAAATTCATTTGTGAAAAATTGAAC 15054 Query 7447 GAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTC 7506 |||| ||| |||||||||||||| | || |||| || || || || ||||| || Sbjct 15053 AAGTCGATCATCAAAATCTTCACCACCAAGATGAGTATTTCCAGCAGTGGCCTTGACCTC 14994 Query 7507 AAAGATACCTCCTTCAATGTTT---AACAACGAAACATCAAACGTACC 7551 || | ||||||| | || | | ||||||||||| || || Sbjct 14993 GAAAAGTGATCCTTCAGCGATTGAAAGTATTGAAACATCAAATGTGCC 14946 Score = 82.4 bits (90), Expect = 1e-10 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 ||||| ||| | ||||| ||||||||||| | ||| || |||| | ||||||||| Sbjct 16374 CAGCAGCAACACTTAAAATTCCATTTGCATCGATATCAAATGTTACTTCAATTTGTGGGA 16315 Query 6747 TACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCG 6806 | || | || || | ||| || ||| |||||||||| |||| || | | | ||||| Sbjct 16314 TTCCACGTGGAGCTGGTGGTATTCCCATTAAATCAAAATTACCTAGCATATTATTATCTT 16255 Query 6807 TCGCCTTCTTACGTTCACCTTCA 6829 | | | | |||||||||||||| Sbjct 16254 TTGTCATGCTACGTTCACCTTCA 16232 >seq96 Length=108103 Score = 82.4 bits (90), Expect = 1e-10 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 184231 TTTACCCCTAAGCGGAAAAACACCGTAATGATCACGACCAACAACTGAAAGACCAGCAAT 184290 |||||| | | ||||||||||| ||| ||||||||||||| || | |||| || Sbjct 22460 TTTACCACGCAAAGGAAAAACACCATAACGATCACGACCAACTACACCTAAGCCAGAAAC 22401 Query 184291 TGCAAGTGTTTTTGCAGAATCACCTTCGGTAATAATAAGAGTACACTTACCAGAGTGTGT 184350 || || | || || ||||| ||||| || | || || || ||| | ||| | | | Sbjct 22400 GGCCAGAGACTTGGCCGAATCTCCTTCAGTGAGTATCAGCGTGCACATGGAAGAATTTTT 22341 Query 184351 GGTACCGGCTTTATTGGCATCGTCGAGTTTTGGAATACCC 184390 || || || | ||||||||| || |||||||| |||||| Sbjct 22340 AGTTCCTGCATCATTGGCATCTTCTAGTTTTGGTATACCC 22301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635086927533520