Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq22 127 5e-24 seq59 113 1e-19 seq546 93.3 9e-14 >seq22 Length=171845 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| ||||||||||||||||||||||| || | || || | |||||||| | |||| Sbjct 88146 TGAAGTGTGGACTCTTTTTGAATATTGTAGTCAGACAGTGTGCGGCCATCTTCCAACTGC 88205 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || || || | ||||||||| ||||| || ||||| || || || ||||| || Sbjct 88206 TTTCCGGCAAAAATCAATCGTTGTTGATCTGGTGGGATGCCCTCCTTATCCTGAATCTTG 88265 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| || ||||| || || ||| || || || | || | |||||| || ||| Sbjct 88266 GCTTTGACATTTTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATCGTCTTGCCAGTC 88325 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | ||||| Sbjct 88326 AGCGTTTTGACAAATATCTGCAT 88348 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || || |||||||| || ||||| || ||||| ||||| ||||||||||| ||| Sbjct 88882 TACCGGCAAAAATAAGTCGCTGCTGGTCCGGCGGAATTCCTTCCTTGTCTTGAATCTTTG 88941 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || || || || ||||| ||| || ||||| | ||| | ||| || || |||| Sbjct 88942 CTTTAACATTTTCGATAGTGTCAGAAGCCTCAACTTCCAAGGTGATCGTTTTACCAGTCA 89001 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 ||| ||||| || | |||||| Sbjct 89002 GAGTCTTTACAAATATTTGCAT 89023 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 ||| || ||||| || ||||| || || || ||||||||||| || || ||||| || Sbjct 89439 ACCAGCAAAGATTAGGCGTTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATCTTAGC 89498 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 || || ||||||||||| || ||| ||||||||| | || | || || || |||| Sbjct 89499 TTTTACATTCTCAATGGTATCAGAAGCTTCCACTTCCAACGTTATAGTTTTGCCGGTCAG 89558 Query 195120 AGTTTTTACGAACACTTGCAT 195140 ||||| || || | |||||| Sbjct 89559 TGTTTTGACAAAGATTTGCAT 89579 >seq59 Length=128137 Score = 113 bits (124), Expect = 1e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || || ||||| || ||||| || ||||| |||||||| |||||||| ||||| Sbjct 71870 TACCAGCAAATATAAGGCGCTGTTGATCCGGAGGGATGCCTTCCTTGTCTTGGATTTTAG 71929 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||| || || ||||| ||||| || |||||| ||||| |||| || || || |||| Sbjct 71930 CCTTAACATTTTCAATTGTGTCTGACGATTCCACCTCAAGTGTAATTGTTTTACCAGTCA 71989 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 ||||||| || || | |||||| Sbjct 71990 AAGTTTTAACAAAAATTTGCAT 72011 >seq546 Length=41299 Score = 93.3 bits (102), Expect = 9e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||| || || |||| ||| || || || ||||||||||||||||| |||||||| Sbjct 26449 TACCTGCAAAAATGAGTCTTTGCTGATCAGGCGGAATGCCTTCTTTGTCCTGAATTTTAG 26508 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || || || || || || || ||| |||||||| || | || || || || | Sbjct 26509 ATTTTACATTTTCGATAGTATCAGATGCTTCTACTTCAAGAGTGATTGTTTTGCCGGTTA 26568 Query 195119 AAGTTTTTACGAACACTTGCATTT 195142 ||||||| || || | ||||||| Sbjct 26569 AAGTTTTAACAAATATCTGCATTT 26592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109399464383726