Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24]
5,778 sequences; 75,392,092 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq867 273 2e-67
seq283 257 1e-62
seq642 129 5e-24
seq546 104 2e-16
seq22 93.3 3e-13
>seq867
Length=25794
Score = 273 bits (302), Expect = 2e-67
Identities = 423/600 (71%), Gaps = 18/600 (3%)
Strand=Plus/Plus
Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050
||| || || || || ||||| || || ||||||||||||||||||| ||| |||||
Sbjct 13699 AGCAATTGGAATTGACTTAGGTACTACGTATAGTTGTGTTGGTGTTTATCAATATGGTCG 13758
Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110
||| ||||| || || ||||| ||||| |||| |||||| ||||| |||||| | || ||
Sbjct 13759 AGTAGAAATAATAGCTAATGACCAAGGCAACAAAACTACGCCATCATATGTTGCATTTAC 13818
Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170
||||| ||||| |||| |||||||| ||||| | |||||| || ||||||| ||
Sbjct 13819 GGAAAGTGAACGTTTAATTGGTGATTCAGCATATGATCAAGTAGCTCGTAATCCAGAAAA 13878
Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230
||| |||||| ||||| || || ||| ||| || || ||| | | ||||| |
Sbjct 13879 TACAATTTTTTCAATAAAACGATTGATAGGACGAAAGTTAAACGATCCAAAAGTTCAAGA 13938
Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG- 550289
||||||| ||||| || || | || | ||| ||||| || ||||
Sbjct 13939 AGATATGCGTTTATGGCCATTTAAAGTAATTTCTAAAAATGGCAAACCAGCAATCGAAGT 13998
Query 550290 -CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTA 550348
| | | ||| || | || |||| | |||||| |||||||||||||| ||||
Sbjct 13999 AGAATTTAAGAATGAACAACGAA--CATTTACTCCAGAAGAAATTTCATCTATGATTTTG 14056
Query 550349 ATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAAT 550407
| ||||||||| |||||| | | |||| |||| | || | | ||||| ||
Sbjct 14057 AGTAAAATGAAAGAAACAG-CTGAAATTTTTTTGGGATTTACTGTAAGTAAAGCAGTTAT 14115
Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467
|| |||||||||||||||||||| || || ||||| |||||||| |||||| |||
Sbjct 14116 CACAGTACCAGCATATTTTAATGATAGTCAGCGACAAGCGACTAAAGACGCTGGAATTAT 14175
Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527
|||||| | | || | || ||||| ||||| || || || || ||| | ||||||||
Sbjct 14176 CGCTGGATTAGACGTCTTGCGAATTATTAATGAGCCAACAGCAGCAGCATTAGCATATGG 14235
Query 550528 ACTTGATAA------ACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581
|||||||| | | ||||||||| ||||| ||||| |||||| ||||||
Sbjct 14236 CCTTGATAAGAAATTAAAAAATGATCAA------AATGTTCTCATATTTGATCTTGGAGG 14289
Score = 111 bits (122), Expect = 1e-18
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506
|||||||| ||| | | | || |||||||||||| || |||| |||| |||||
Sbjct 16230 TTTGAAGGTGAACGTAGCATGACAAAAGATAATAATATGCTAGGTAATTTTGATTTAATG 16289
Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566
|| || || || ||||| |||||| | || ||||||||||| || || |||||||||||
Sbjct 16290 GGAATACCACCAGCTCCACGTGGAATCCCACAAATTGAAGTAACATTTGATATCGATGCA 16349
Query 552567 AATGGAATTTTGAATGTGACTGCT 552590
||||||||||| | ||| |||||
Sbjct 16350 AATGGAATTTTAAGTGTTGCTGCT 16373
Score = 104 bits (114), Expect = 2e-16
Identities = 157/218 (72%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269
||||| |||||||| || || ||||| || ||| |||||||||||||||| || |||
Sbjct 15679 AATCCTGATGAGGCAGTAGCTTATGGCGCAGCAGTTCAAGCAGCTATTCTCACT-GACGT 15737
Query 552270 AC-TGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTT 552328
|| ||||| ||| | || | | | || || ||||| || || || ||| | ||| |
Sbjct 15738 ACGTGATGCAAATGTGAAAGACGTGTTGCTAGTTGATGTGACACCACTTTCTTTAGGTAT 15797
Query 552329 AGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAA 552388
||||| | ||| || | ||||||| | | || || |||||||| ||||| |||||
Sbjct 15798 TGAAACTGCTGGTGGAGTGATGACTACTTTAATTGAACGAAATACTCGAATTCC-TGTAA 15856
Query 552389 AAA-ATCTCGTGTATTTTCTACGTATTCAGATAATCAA 552425
||| ||| | ||| |||| | |||| ||||||||
Sbjct 15857 AAACATCAAAAATGTTTACTACATTTTCAAATAATCAA 15894
>seq283
Length=65264
Score = 257 bits (284), Expect = 1e-62
Identities = 487/711 (68%), Gaps = 8/711 (1%)
Strand=Plus/Plus
Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTC-ATCTGGTAC 551953
|| ||||| || | | ||||| || |||||||| ||||| | | || | || || |
Sbjct 45671 GCCCTTCGGCGGTTGCGTACTGCATGTGAAAGAGCAAAACGGACGTTGTCCAGCTCGT-C 45729
Query 551954 TCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTC 552013
||| | | ||| || | |||||| | || ||||| || || | | || |||| |
Sbjct 45730 ACAAGCAAGTATCGAGATCGATTCACTGTTCGAGGGTATCGACTTCTACACAAGTATTAC 45789
Query 552014 GAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGA 552073
| ||| |||||||| | || | ||| | || | |||||| || ||||||||
Sbjct 45790 TCGTGCCCGTTTTGAAGAGCTCTGCGCAGATTTGTTCCGCTCAACAATGGATCCAGTAGA 45849
Query 552074 ACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGG 552133
| ||| ||| | ||| |||| || ||||| | |||| || || ||||| || |||||
Sbjct 45850 AAAAGCTTTGCGTGATGCAAAAATGGATAAGGCTCAAGTGCACGACATTGTTCTAGTTGG 45909
Query 552134 TGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTA---TTTCAATGGTAA 552190
||| ||||| | ||||||||| | | ||| |||| ||| | |||| ||| ||
Sbjct 45910 TGGCTCTACTCGTATTCCTAAAGTGCA-GAA--GTTACTTTCCGACTTTTTCTCTGGCAA 45966
Query 552191 AAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGC 552250
| | || ||| | ||| ||||||| ||||| |||||||| ||||| || || |||| ||
Sbjct 45967 AGAGTTGAATAAGAGTATTAATCCCGATGAAGCTGTTGCATATGGGGCATCAGTTCAGGC 46026
Query 552251 AGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTAC 552310
||||||| | |||||| | | |||| | || || || ||||| ||||||| |
Sbjct 46027 AGCTATTTTATCTGGAGATAAGTCTGAAGCTGTGCAGGATCTTCTACTTCTAGATGTCGC 46086
Query 552311 TCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAA 552370
|||||| || | || | ||||| | ||| ||| | |||||| || || | | ||
Sbjct 46087 TCCTCTCTCCTTGGGAATTGAAACTGCTGGCGGTGTAATGACTGCCCTCATTAAGCGTAA 46146
Query 552371 TACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGC 552430
|||||| || || ||||| || | || |||||||||| || || || |||
Sbjct 46147 TACTACCATCCCAACTAAAACGTCCCAAACCTTCACTACGTATTCCGACAACCAGCCTGG 46206
Query 552431 TGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGG 552490
||| ||||| ||| |||||| || || | | |||||||| ||||||| |||||
Sbjct 46207 TGTGTTGATTCAGGTTTATGAAGGTGAGCGAGCAATGACTAAAGACAATAATCTGCTTGG 46266
Query 552491 TACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTAC 552550
|| || | || || || || |||||||| || || || || ||||||||||| ||
Sbjct 46267 TAAATTCGAGTTGTCTGGAATCCCACCTGCTCCCCGAGGTGTCCCTCAAATTGAAGTAAC 46326
Query 552551 TTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601
|| ||||| ||||| || || || ||||||| ||||| || |||||
Sbjct 46327 GTTTGATATTGATGCGAACGGTATCCTGAATGTATCTGCTCAAGACAAATC 46377
Score = 87.8 bits (96), Expect = 1e-11
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 550397 GATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGAT 550456
|| || ||| | || || || || ||||||||||| || || ||||| || || || |||
Sbjct 45148 GACGCTGTAGTCACAGTCCCTGCTTATTTTAATGATTCCCAGCGTCAGGCAACAAAGGAT 45207
Query 550457 GCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516
| || ||||| || || || || | |||||||| ||||||||||| || || |||
Sbjct 45208 TCAGGTGCCATTGCGGGTCTGAACGTGTTGCGTATTATTAATGAACCTACAGCAGCAGCA 45267
Query 550517 CTTGCATATGGACTTGATAAA 550537
|||| ||||| | ||||||
Sbjct 45268 ATTGCCTATGGTTTAGATAAA 45288
>seq642
Length=34890
Score = 129 bits (142), Expect = 5e-24
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381
|||||| |||||||| |||||||| | | |||||||| | | || | | | |
Sbjct 16605 CCAGAAGAAATTTCAGCTATGGTTCTTACTAAAATGAAGAATATTGCTGAATCGTATTTG 16546
Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441
|| ||||||||| | |||| | | || || || || || || ||||| | ||||||
Sbjct 16545 GGAAAAGAAGTTAAGCATGCTATCGTGACAGTGCCCGCTTACTTCAATGATGCGCAACGT 16486
Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501
|| ||||| |||||||| || |||||| || |||||||| | || || |||||||||
Sbjct 16485 CAGGCTACCAAAGATGCGGGTTCTATTGCAGGCCTTAATGTCGTGCGAATAATCAATGAA 16426
Query 550502 CCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537
|| || |||||||| |||||||||| || || |||
Sbjct 16425 CCCACGGCTGCTGCTATTGCATATGGTCTAGACAAA 16390
Score = 113 bits (124), Expect = 4e-19
Identities = 173/243 (71%), Gaps = 14/243 (6%)
Strand=Plus/Minus
Query 550019 TATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGT 550078
|| |||||||| || |||| ||||||| ||| |||||||| || ||||| || |||
Sbjct 16976 TACAGTTGTGTCGGCGTTTATAAAAATGGACGAGTGGAAATTATAGCTAATGAACAGGGT 16917
Query 550079 AACAGAACTACTCCATCTTATGTTTCTTTCACG---GAAACTG---AACATTTAGTTGGT 550132
||||||| ||| ||||| |||||| | |||| | |||| || ||| | | |||||
Sbjct 16916 AACAGAATTACACCATCATATGTTGCATTCATGAGCGAAAGTGGTGAACGTCTGATTGGT 16857
Query 550133 GATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGT 550192
||||||||||| |||| ||| ||||| ||||| | || |||| |||||||
Sbjct 16856 GATGCAGCAAAGAATCAGTTAACTACCAATCCAGAAAATACAGTCTTCGATGTTAAACGT 16797
Query 550193 TTAATTGG--AAGAAGTTTTAAT--GATTCGACTGTTCAGGCAGATATGAAGCATTGGCC 550248
|| || || |||| || | ||| | | |||||| |||||| | ||||||||
Sbjct 16796 TTGATCGGTCGAGAA----TACTCGGATCCAAAAGTTCAGCAAGATATTAGACATTGGCC 16741
Query 550249 TTT 550251
|||
Sbjct 16740 TTT 16738
>seq546
Length=41299
Score = 104 bits (114), Expect = 2e-16
Identities = 109/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| ||||||||||||||||| ||||| |||||||| || |||||||| |
Sbjct 26451 CCTGCAAAAATGAGTCTTTGCTGATCAGGCGGAATGCCTTCTTTGTCCTGAATTTTAGAT 26510
Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
||||| || || ||||||| || ||| ||| ||||| | ||||| || || |
Sbjct 26511 TTTACATTTTCGATAGTATCAGATGCTTCTAC-TTCAAGAGTGATTGTTTTGCCGGTTAA 26569
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
||||||||| || || |||||
Sbjct 26570 AGTTTTAACAAATATCTGCAT 26590
>seq22
Length=171845
Score = 93.3 bits (102), Expect = 3e-13
Identities = 156/221 (71%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314
|||||||| || | |||||| || ||| | |||| ||||||||| |||| || || |
Sbjct 88131 AGACGGAGAACCAAATGAAGTGTGGACTCTTTTTG--AATATTGTAGTCAGACAGTGTGC 88188
Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374
|||||| | || |||||||||||||| | || ||| ||||| || || || || |
Sbjct 88189 GGCCATCTTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCTGGTGGGATGCCCT 88248
Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGA 563433
| ||||| ||||| || ||| || ||||| ||||||| | ||| || | |
Sbjct 88249 CCTTATCCTGAATCTTGGCTTTGACATTTTCAATCGTATCAGAAGCCTCTAC-CTCCAAA 88307
Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
|| | || || ||||| || ||||| || || || |||||
Sbjct 88308 GTGATCGTCTTGCCAGTCAGCGTTTTGACAAATATCTGCAT 88348
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4028990433301220
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