Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq867 273 2e-67 seq283 257 1e-62 seq642 129 5e-24 seq546 104 2e-16 seq22 93.3 3e-13 >seq867 Length=25794 Score = 273 bits (302), Expect = 2e-67 Identities = 423/600 (71%), Gaps = 18/600 (3%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||| || || || || ||||| || || ||||||||||||||||||| ||| ||||| Sbjct 13699 AGCAATTGGAATTGACTTAGGTACTACGTATAGTTGTGTTGGTGTTTATCAATATGGTCG 13758 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||| ||||| || || ||||| ||||| |||| |||||| ||||| |||||| | || || Sbjct 13759 AGTAGAAATAATAGCTAATGACCAAGGCAACAAAACTACGCCATCATATGTTGCATTTAC 13818 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 ||||| ||||| |||| |||||||| ||||| | |||||| || ||||||| || Sbjct 13819 GGAAAGTGAACGTTTAATTGGTGATTCAGCATATGATCAAGTAGCTCGTAATCCAGAAAA 13878 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 ||| |||||| ||||| || || ||| ||| || || ||| | | ||||| | Sbjct 13879 TACAATTTTTTCAATAAAACGATTGATAGGACGAAAGTTAAACGATCCAAAAGTTCAAGA 13938 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG- 550289 ||||||| ||||| || || | || | ||| ||||| || |||| Sbjct 13939 AGATATGCGTTTATGGCCATTTAAAGTAATTTCTAAAAATGGCAAACCAGCAATCGAAGT 13998 Query 550290 -CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTA 550348 | | | ||| || | || |||| | |||||| |||||||||||||| |||| Sbjct 13999 AGAATTTAAGAATGAACAACGAA--CATTTACTCCAGAAGAAATTTCATCTATGATTTTG 14056 Query 550349 ATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAAT 550407 | ||||||||| |||||| | | |||| |||| | || | | ||||| || Sbjct 14057 AGTAAAATGAAAGAAACAG-CTGAAATTTTTTTGGGATTTACTGTAAGTAAAGCAGTTAT 14115 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 || |||||||||||||||||||| || || ||||| |||||||| |||||| ||| Sbjct 14116 CACAGTACCAGCATATTTTAATGATAGTCAGCGACAAGCGACTAAAGACGCTGGAATTAT 14175 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 |||||| | | || | || ||||| ||||| || || || || ||| | |||||||| Sbjct 14176 CGCTGGATTAGACGTCTTGCGAATTATTAATGAGCCAACAGCAGCAGCATTAGCATATGG 14235 Query 550528 ACTTGATAA------ACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 |||||||| | | ||||||||| ||||| ||||| |||||| |||||| Sbjct 14236 CCTTGATAAGAAATTAAAAAATGATCAA------AATGTTCTCATATTTGATCTTGGAGG 14289 Score = 111 bits (122), Expect = 1e-18 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506 |||||||| ||| | | | || |||||||||||| || |||| |||| ||||| Sbjct 16230 TTTGAAGGTGAACGTAGCATGACAAAAGATAATAATATGCTAGGTAATTTTGATTTAATG 16289 Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 || || || || ||||| |||||| | || ||||||||||| || || ||||||||||| Sbjct 16290 GGAATACCACCAGCTCCACGTGGAATCCCACAAATTGAAGTAACATTTGATATCGATGCA 16349 Query 552567 AATGGAATTTTGAATGTGACTGCT 552590 ||||||||||| | ||| ||||| Sbjct 16350 AATGGAATTTTAAGTGTTGCTGCT 16373 Score = 104 bits (114), Expect = 2e-16 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 ||||| |||||||| || || ||||| || ||| |||||||||||||||| || ||| Sbjct 15679 AATCCTGATGAGGCAGTAGCTTATGGCGCAGCAGTTCAAGCAGCTATTCTCACT-GACGT 15737 Query 552270 AC-TGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTT 552328 || ||||| ||| | || | | | || || ||||| || || || ||| | ||| | Sbjct 15738 ACGTGATGCAAATGTGAAAGACGTGTTGCTAGTTGATGTGACACCACTTTCTTTAGGTAT 15797 Query 552329 AGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAA 552388 ||||| | ||| || | ||||||| | | || || |||||||| ||||| ||||| Sbjct 15798 TGAAACTGCTGGTGGAGTGATGACTACTTTAATTGAACGAAATACTCGAATTCC-TGTAA 15856 Query 552389 AAA-ATCTCGTGTATTTTCTACGTATTCAGATAATCAA 552425 ||| ||| | ||| |||| | |||| |||||||| Sbjct 15857 AAACATCAAAAATGTTTACTACATTTTCAAATAATCAA 15894 >seq283 Length=65264 Score = 257 bits (284), Expect = 1e-62 Identities = 487/711 (68%), Gaps = 8/711 (1%) Strand=Plus/Plus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTC-ATCTGGTAC 551953 || ||||| || | | ||||| || |||||||| ||||| | | || | || || | Sbjct 45671 GCCCTTCGGCGGTTGCGTACTGCATGTGAAAGAGCAAAACGGACGTTGTCCAGCTCGT-C 45729 Query 551954 TCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTC 552013 ||| | | ||| || | |||||| | || ||||| || || | | || |||| | Sbjct 45730 ACAAGCAAGTATCGAGATCGATTCACTGTTCGAGGGTATCGACTTCTACACAAGTATTAC 45789 Query 552014 GAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGA 552073 | ||| |||||||| | || | ||| | || | |||||| || |||||||| Sbjct 45790 TCGTGCCCGTTTTGAAGAGCTCTGCGCAGATTTGTTCCGCTCAACAATGGATCCAGTAGA 45849 Query 552074 ACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGG 552133 | ||| ||| | ||| |||| || ||||| | |||| || || ||||| || ||||| Sbjct 45850 AAAAGCTTTGCGTGATGCAAAAATGGATAAGGCTCAAGTGCACGACATTGTTCTAGTTGG 45909 Query 552134 TGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTA---TTTCAATGGTAA 552190 ||| ||||| | ||||||||| | | ||| |||| ||| | |||| ||| || Sbjct 45910 TGGCTCTACTCGTATTCCTAAAGTGCA-GAA--GTTACTTTCCGACTTTTTCTCTGGCAA 45966 Query 552191 AAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGC 552250 | | || ||| | ||| ||||||| ||||| |||||||| ||||| || || |||| || Sbjct 45967 AGAGTTGAATAAGAGTATTAATCCCGATGAAGCTGTTGCATATGGGGCATCAGTTCAGGC 46026 Query 552251 AGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTAC 552310 ||||||| | |||||| | | |||| | || || || ||||| ||||||| | Sbjct 46027 AGCTATTTTATCTGGAGATAAGTCTGAAGCTGTGCAGGATCTTCTACTTCTAGATGTCGC 46086 Query 552311 TCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAA 552370 |||||| || | || | ||||| | ||| ||| | |||||| || || | | || Sbjct 46087 TCCTCTCTCCTTGGGAATTGAAACTGCTGGCGGTGTAATGACTGCCCTCATTAAGCGTAA 46146 Query 552371 TACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGC 552430 |||||| || || ||||| || | || |||||||||| || || || ||| Sbjct 46147 TACTACCATCCCAACTAAAACGTCCCAAACCTTCACTACGTATTCCGACAACCAGCCTGG 46206 Query 552431 TGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGG 552490 ||| ||||| ||| |||||| || || | | |||||||| ||||||| ||||| Sbjct 46207 TGTGTTGATTCAGGTTTATGAAGGTGAGCGAGCAATGACTAAAGACAATAATCTGCTTGG 46266 Query 552491 TACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTAC 552550 || || | || || || || |||||||| || || || || ||||||||||| || Sbjct 46267 TAAATTCGAGTTGTCTGGAATCCCACCTGCTCCCCGAGGTGTCCCTCAAATTGAAGTAAC 46326 Query 552551 TTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 || ||||| ||||| || || || ||||||| ||||| || ||||| Sbjct 46327 GTTTGATATTGATGCGAACGGTATCCTGAATGTATCTGCTCAAGACAAATC 46377 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 550397 GATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGAT 550456 || || ||| | || || || || ||||||||||| || || ||||| || || || ||| Sbjct 45148 GACGCTGTAGTCACAGTCCCTGCTTATTTTAATGATTCCCAGCGTCAGGCAACAAAGGAT 45207 Query 550457 GCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516 | || ||||| || || || || | |||||||| ||||||||||| || || ||| Sbjct 45208 TCAGGTGCCATTGCGGGTCTGAACGTGTTGCGTATTATTAATGAACCTACAGCAGCAGCA 45267 Query 550517 CTTGCATATGGACTTGATAAA 550537 |||| ||||| | |||||| Sbjct 45268 ATTGCCTATGGTTTAGATAAA 45288 >seq642 Length=34890 Score = 129 bits (142), Expect = 5e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381 |||||| |||||||| |||||||| | | |||||||| | | || | | | | Sbjct 16605 CCAGAAGAAATTTCAGCTATGGTTCTTACTAAAATGAAGAATATTGCTGAATCGTATTTG 16546 Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441 || ||||||||| | |||| | | || || || || || || ||||| | |||||| Sbjct 16545 GGAAAAGAAGTTAAGCATGCTATCGTGACAGTGCCCGCTTACTTCAATGATGCGCAACGT 16486 Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501 || ||||| |||||||| || |||||| || |||||||| | || || ||||||||| Sbjct 16485 CAGGCTACCAAAGATGCGGGTTCTATTGCAGGCCTTAATGTCGTGCGAATAATCAATGAA 16426 Query 550502 CCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 || || |||||||| |||||||||| || || ||| Sbjct 16425 CCCACGGCTGCTGCTATTGCATATGGTCTAGACAAA 16390 Score = 113 bits (124), Expect = 4e-19 Identities = 173/243 (71%), Gaps = 14/243 (6%) Strand=Plus/Minus Query 550019 TATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGT 550078 || |||||||| || |||| ||||||| ||| |||||||| || ||||| || ||| Sbjct 16976 TACAGTTGTGTCGGCGTTTATAAAAATGGACGAGTGGAAATTATAGCTAATGAACAGGGT 16917 Query 550079 AACAGAACTACTCCATCTTATGTTTCTTTCACG---GAAACTG---AACATTTAGTTGGT 550132 ||||||| ||| ||||| |||||| | |||| | |||| || ||| | | ||||| Sbjct 16916 AACAGAATTACACCATCATATGTTGCATTCATGAGCGAAAGTGGTGAACGTCTGATTGGT 16857 Query 550133 GATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGT 550192 ||||||||||| |||| ||| ||||| ||||| | || |||| ||||||| Sbjct 16856 GATGCAGCAAAGAATCAGTTAACTACCAATCCAGAAAATACAGTCTTCGATGTTAAACGT 16797 Query 550193 TTAATTGG--AAGAAGTTTTAAT--GATTCGACTGTTCAGGCAGATATGAAGCATTGGCC 550248 || || || |||| || | ||| | | |||||| |||||| | |||||||| Sbjct 16796 TTGATCGGTCGAGAA----TACTCGGATCCAAAAGTTCAGCAAGATATTAGACATTGGCC 16741 Query 550249 TTT 550251 ||| Sbjct 16740 TTT 16738 >seq546 Length=41299 Score = 104 bits (114), Expect = 2e-16 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| ||||||||||||||||| ||||| |||||||| || |||||||| | Sbjct 26451 CCTGCAAAAATGAGTCTTTGCTGATCAGGCGGAATGCCTTCTTTGTCCTGAATTTTAGAT 26510 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| || || ||||||| || ||| ||| ||||| | ||||| || || | Sbjct 26511 TTTACATTTTCGATAGTATCAGATGCTTCTAC-TTCAAGAGTGATTGTTTTGCCGGTTAA 26569 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||||||||| || || ||||| Sbjct 26570 AGTTTTAACAAATATCTGCAT 26590 >seq22 Length=171845 Score = 93.3 bits (102), Expect = 3e-13 Identities = 156/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 |||||||| || | |||||| || ||| | |||| ||||||||| |||| || || | Sbjct 88131 AGACGGAGAACCAAATGAAGTGTGGACTCTTTTTG--AATATTGTAGTCAGACAGTGTGC 88188 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 |||||| | || |||||||||||||| | || ||| ||||| || || || || | Sbjct 88189 GGCCATCTTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCTGGTGGGATGCCCT 88248 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGA 563433 | ||||| ||||| || ||| || ||||| ||||||| | ||| || | | Sbjct 88249 CCTTATCCTGAATCTTGGCTTTGACATTTTCAATCGTATCAGAAGCCTCTAC-CTCCAAA 88307 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || ||||| || ||||| || || || ||||| Sbjct 88308 GTGATCGTCTTGCCAGTCAGCGTTTTGACAAATATCTGCAT 88348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028990433301220