Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq546 152 4e-32 seq22 152 4e-32 seq59 113 4e-20 >seq546 Length=41299 Score = 152 bits (168), Expect = 4e-32 Identities = 119/142 (84%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||||||||| || | | || ||||| ||||||||||||||||| || |||||||| Sbjct 26449 TACCTGCAAAAATGAGTCTTTGCTGATCAGGCGGAATGCCTTCTTTGTCCTGAATTTTAG 26508 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| |||| | ||| ||||| | ||| ||||||||||||| ||||||||||||| Sbjct 26509 ATTTTACATTTTCGATAGTATCAGATGCTTCTACTTCAAGAGTGATTGTTTTGCCGGTTA 26568 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||||||| |||||||||||||| Sbjct 26569 AAGTTTTAACAAATATCTGCAT 26590 >seq22 Length=171845 Score = 152 bits (168), Expect = 4e-32 Identities = 164/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| |||||||| || || |||||||| |||||||| || | | || | | | Sbjct 88133 ACGGAGAACCAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCAGACAGTGTGCGGCC 88192 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| ||||| ||||| || ||||| ||||| || |||||||| || || ||||| || || Sbjct 88193 ATCTTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCTGGTGGGATGCCCTCCTT 88252 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||| ||||| || ||| ||| |||| | || ||||| | || || || | ||||| Sbjct 88253 ATCCTGAATCTTGGCTTTGACATTTTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGAT 88312 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||| ||||| || | ||||| ||||||||||||||| Sbjct 88313 CGTCTTGCCAGTCAGCGTTTTGACAAATATCTGCATG 88349 Score = 113 bits (124), Expect = 4e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| || | ||||| || || |||||||| ||||| || |||||||| ||| Sbjct 88882 TACCGGCAAAAATAAGTCGCTGCTGGTCCGGCGGAATTCCTTCCTTGTCTTGAATCTTTG 88941 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| ||| |||| | ||||||||| | || ||||| | |||| |||||| || || | Sbjct 88942 CTTTAACATTTTCGATAGTGTCAGAAGCCTCAACTTCCAAGGTGATCGTTTTACCAGTCA 89001 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||| ||||||||||| ||||| Sbjct 89002 GAGTCTTTACAAATATTTGCAT 89023 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388 ||| ||||| || | || || ||||| || ||||||||||| ||||| ||||| || Sbjct 89439 ACCAGCAAAGATTAGGCGTTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATCTTAGC 89498 Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448 ||||||| | || | || ||||| | ||||||||| | || | ||||||||||| | Sbjct 89499 TTTTACATTCTCAATGGTATCAGAAGCTTCCACTTCCAACGTTATAGTTTTGCCGGTCAG 89558 Query 101449 AGTTTTTACAAATATCTGCAT 101469 ||||| ||||| || ||||| Sbjct 89559 TGTTTTGACAAAGATTTGCAT 89579 >seq59 Length=128137 Score = 113 bits (124), Expect = 4e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| |||||||| | ||||||||||| || || |||||||| || ||||| ||||| Sbjct 71870 TACCAGCAAATATAAGGCGCTGTTGATCCGGAGGGATGCCTTCCTTGTCTTGGATTTTAG 71929 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 || ||| |||| | ||||| |||| |||||| ||||| || | ||||| || || | Sbjct 71930 CCTTAACATTTTCAATTGTGTCTGACGATTCCACCTCAAGTGTAATTGTTTTACCAGTCA 71989 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||||||| ||||| || ||||| Sbjct 71990 AAGTTTTAACAAAAATTTGCAT 72011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396250494322746