Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq22 143 2e-29 seq59 91.5 1e-13 >seq22 Length=171845 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || ||| |||||||||||||||||| ||||| || | || | || ||| Sbjct 88140 ACCAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCAGACAGTGTGCGGCCATCTTCC 88199 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| |||||||| |||| ||| |||||||| | || | ||||||||| || | Sbjct 88200 AACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCTGGTGGGATGCCCTCCTTATCCTGA 88259 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| ||| | | | || || ||||| ||||||| || ||||| || Sbjct 88260 ATCTTGGCTTTGACATTTTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATCGTCTTG 88319 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| ||||| ||||| |||||||| Sbjct 88320 CCAGTCAGCGTTTTGACAAATATCTGCAT 88348 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 48625 TACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTT 48684 |||| ||||| || || |||||||| || | ||||| || |||||||| ||| ||| Sbjct 88547 TACCCGCAAAAATAAGACGCTGTTGGTCAGGGGGAATACCTTCCTTGTCCTGAATTTTTG 88606 Query 48685 GTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCA 48744 || ||| | | | ||||| || || ||||||| ||| || ||||| || |||| Sbjct 88607 CCTTCACATTTTCAATTGTATCTGATGCTTCAACCTCCAACGTTATAGTTTTGCCAGTCA 88666 Query 48745 AAGTTTTTACAAAAATCTGCAT 48766 | ||||| |||||||||||||| Sbjct 88667 ACGTTTTCACAAAAATCTGCAT 88688 >seq59 Length=128137 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 48625 TACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTT 48684 |||| |||||||| || ||||||||||||| || | ||| |||||||| || || Sbjct 71870 TACCAGCAAATATAAGGCGCTGTTGATCCGGAGGGATGCCTTCCTTGTCTTGGATTTTAG 71929 Query 48685 GTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCA 48744 || ||| | | | ||||||| |||||||| | ||||| ||||| || |||| Sbjct 71930 CCTTAACATTTTCAATTGTGTCTGACGATTCCACCTCAAGTGTAATTGTTTTACCAGTCA 71989 Query 48745 AAGTTTTTACAAAAATCTGCATC 48767 ||||||| |||||||| |||||| Sbjct 71990 AAGTTTTAACAAAAATTTGCATC 72012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380910774612294