Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq867 288 6e-72 seq283 190 1e-42 seq22 116 2e-20 seq642 109 4e-18 seq5048 98.7 6e-15 seq96 95.1 8e-14 seq538 93.3 3e-13 seq59 93.3 3e-13 >seq867 Length=25794 Score = 288 bits (318), Expect = 6e-72 Identities = 423/596 (71%), Gaps = 12/596 (2%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 |||||||| ||||| ||||| ||||| || |||||||| | ||||| ||| ||||| | Sbjct 13700 GCAATTGGAATTGACTTAGGTACTACGTATAGTTGTGTTGGTGTTTATCAATATGGTCGA 13759 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 ||||||||||| || ||||||||||| || | ||| || |||||||||||| | ||||| Sbjct 13760 GTAGAAATAATAGCTAATGACCAAGGCAACAAAACTACGCCATCATATGTTGCATTTACG 13819 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 |||| ||||| | | ||||| ||| | || | |||||| || |||||| | ||| Sbjct 13820 GAAAGTGAACGTTTAATTGGTGATTCAGCATATGATCAAGTAGCTCGTAATCCAGAAAAT 13879 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || |||||| ||| ||||||| || || || || | ||| | | || ||| Sbjct 13880 ACAATTTTTTCAATAAAACGATTGATAGGACGAAAGTTAAACGATCCAAAAGTTCAAGAA 13939 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG-- 474626 ||||||||| ||||| ||||| || || | ||| |||||| || |||| Sbjct 13940 GATATGCGTTTATGGCCATTTAAAGTAATTTCTAAAAATGGCAAACCAGCAATCGAAGTA 13999 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 ||| | | | | ||| || |||| | || ||| ||||||| || ||| |||| Sbjct 14000 GAATTTAAGAATGAACAACGAA--CATTTACTCCAGAAGAAATTTCATCTATGATTTTGA 14057 Query 474687 CCAAAATGAAACAAACCGCGAGCTCATATCTT----GGACAAGAAGTAACTGATGCAGTA 474742 ||||||||| |||| |||| | || || ||| |||| | | ||||| Sbjct 14058 GTAAAATGAAAGAAAC----AGCTGAAATTTTTTTGGGATTTACTGTAAGTAAAGCAGTT 14113 Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 || || || |||||||||||||||||| ||| || ||||| |||||||| || |||| Sbjct 14114 ATCACAGTACCAGCATATTTTAATGATAGTCAGCGACAAGCGACTAAAGACGCTGGAATT 14173 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 || || || | | || || || ||||||||||| ||||||||||| ||| | || ||| Sbjct 14174 ATCGCTGGATTAGACGTCTTGCGAATTATTAATGAGCCAACAGCAGCAGCATTAGCATAT 14233 Query 474863 GGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGG 474918 || ||||||||||| | | || || ||||||| | || |||||| |||||| Sbjct 14234 GGCCTTGATAAGAAATTAAAAAATGATCAAAATGTTCTCATATTTGATCTTGGAGG 14289 Score = 96.9 bits (106), Expect = 2e-14 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 476030 TTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAA 476089 |||||||||||| | | | || ||||||||||| | || || | |||| || | Sbjct 16230 TTTGAAGGTGAACGTAGCATGACAAAAGATAATAATATGCTAGGTAATTTTGATTTAATG 16289 Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || || || || ||||| | ||| | || ||||||||||| || |||||||| |||||| Sbjct 16290 GGAATACCACCAGCTCCACGTGGAATCCCACAAATTGAAGTAACATTTGATATCGATGCA 16349 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATATAACT 476209 ||||| ||| | | |||| ||||| ||| |||| | || ||||| || ||| Sbjct 16350 AATGGAATTTTAAGTGTTGCTGCTGTTGAACGCTCTACTGGAAAAAGTAACAAAATACAA 16409 Query 476210 ATTACAAA 476217 |||| ||| Sbjct 16410 ATTAAAAA 16417 Score = 87.8 bits (96), Expect = 1e-11 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 290823 CAAGACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGAC 290882 |||| ||||||| ||||| ||||||||||| ||||| ||||||| || || || | | Sbjct 14240 CAAGGCCATATGCTAATGCTGCTGCTGTTGGCTCATTAATAATTCGCAAGACGTCTAATC 14181 Query 290883 CTGCAATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGA 290942 | || || || | | ||| ||| || || || || |||||||||||| || || | Sbjct 14180 CAGCGATAATTCCAGCGTCTTTAGTCGCTTGTCGCTGACTATCATTAAAATATGCTGGTA 14121 Query 290943 CTGTAATAACAGCTTT 290958 |||| ||||| ||||| Sbjct 14120 CTGTGATAACTGCTTT 14105 >seq283 Length=65264 Score = 190 bits (210), Expect = 1e-42 Identities = 395/582 (68%), Gaps = 6/582 (1%) Strand=Plus/Plus Query 475639 AACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCA 475698 |||||| || || || ||| ||| | | | ||| | ||| | || || | ||||| || Sbjct 45832 AACAATGGATCCAGTAGAAAAAGCTTTGCGTGATGCAAAAATGGATAAGGCTCAAGTGCA 45891 Query 475699 TGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATG-CTTTCAT 475757 || |||||||| || || || || || | ||||| ||| | |||| | ||||| Sbjct 45892 CGACATTGTTCTAGTTGGTGGCTCTACTCGTATTCCTAAAGTGC-AGAAGTTACTTTCCG 45950 Query 475758 CATATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATG 475817 | ||| ||| ||| |||| ||| | ||| | ||||| ||||||||||||||||||| Sbjct 45951 ACTTTTTCTCTGGCAAAGAGTTGAATAAGAGTATTAATCCCGATGAAGCTGTTGCATATG 46010 Query 475818 GAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAACTAAATA--ATAT 475875 | || | || || |||||||||||||| || | | || | ||| || | || | Sbjct 46011 GGGCATCAGTTCAGGCAGCTATTTTATCTGGAGA-TAAGTCT-GAAGCTGTGCAGGATCT 46068 Query 475876 TGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGAC 475935 | ||||| | || || |||| || || || || ||||||| | ||| || | ||||| Sbjct 46069 TCTACTTCTAGATGTCGCTCCTCTCTCCTTGGGAATTGAAACTGCTGGCGGTGTAATGAC 46128 Query 475936 TAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTA 475995 | || ||| | | |||||| | |||||| |||| || || || | || || Sbjct 46129 TGCCCTCATTAAGCGTAATACTACCATCCCAACTAAAACGTCCCAAACCTTCACTACGTA 46188 Query 475996 TTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAA 476055 ||| || || || | ||| || || | | ||||||||| || | | ||||| Sbjct 46189 TTCCGACAACCAGCCTGGTGTGTTGATTCAGGTTTATGAAGGTGAGCGAGCAATGACTAA 46248 Query 476056 AGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGT 476115 ||| ||||| ||||| | || | | || || || ||||||||| |||| || Sbjct 46249 AGACAATAATCTGCTTGGTAAATTCGAGTTGTCTGGAATCCCACCTGCTCCCCGAGGTGT 46308 Query 476116 TCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCTTG 476175 |||||||||||||| || |||||||||||||| || ||||| || ||||| ||||| Sbjct 46309 CCCTCAAATTGAAGTAACGTTTGATATTGATGCGAACGGTATCCTGAATGTATCTGCTCA 46368 Query 476176 TGATAAATCTAGTAACAAGAGTAAAAATATAACTATTACAAA 476217 || ||||| | | ||| || || || || ||||| || Sbjct 46369 AGACAAATCAACTGGCAAACAGAACAAGATTACCATTACGAA 46410 Score = 118 bits (130), Expect = 7e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793 || || ||| | || || || || |||||||||||||| || ||||| ||||| || ||| Sbjct 45148 GACGCTGTAGTCACAGTCCCTGCTTATTTTAATGATTCCCAGCGTCAGGCAACAAAGGAT 45207 Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853 | || ||||| ||||| || || || ||||||||||||||||| |||||||| ||| Sbjct 45208 TCAGGTGCCATTGCGGGTCTGAACGTGTTGCGTATTATTAATGAACCTACAGCAGCAGCA 45267 Query 474854 CTTGCTTATGGTCTTGATAAGAA 474876 |||| |||||| | ||||| || Sbjct 45268 ATTGCCTATGGTTTAGATAAAAA 45290 >seq22 Length=171845 Score = 116 bits (128), Expect = 2e-20 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || | ||||||||| ||||| || ||| || |||| || || Sbjct 88127 ACGAAGACGGAGAACCAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCAGACAGTGT 88186 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| | |||||||| |||||||| | ||||||||||| || || || || Sbjct 88187 GCGGCCATCTTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCTGGTGGGATGCC 88246 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG 480714 ||||| || |||||||| ||||||| |||||| ||||||| Sbjct 88247 CTCCTTATCCTGAATCTTGGCTTTGACATTTTCAATCGTATCAG 88290 Score = 111 bits (122), Expect = 1e-18 Identities = 109/138 (79%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 || ||||||||||| || || || || || ||||||||||||||||||||||||||| | Sbjct 88884 CCGGCAAAAATAAGTCGCTGCTGGTCCGGCGGAATTCCTTCCTTGTCTTGAATCTTTGCT 88943 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| ||| ||||| |||| | | || || ||| ||| || |||||||| || || Sbjct 88944 TTAACATTTTCGATAGTGTCAGAAGCCTCAACTTCCAA-GGTGATCGTTTTACCAGTCAG 89002 Query 480752 AGTCTTAACGAAAATTTG 480769 |||||| || || ||||| Sbjct 89003 AGTCTTTACAAATATTTG 89020 Score = 89.7 bits (98), Expect = 3e-12 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 || |||||||||||||| ||||| ||||| ||||| ||||||||||| ||||| ||| Sbjct 88549 CCCGCAAAAATAAGACGCTGTTGGTCAGGGGGAATACCTTCCTTGTCCTGAATTTTTGCC 88608 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| |||||| ||||| | || | || | ||| || |||||||| || || | Sbjct 88609 TTCACATTTTCAATTGTATCTGATGCTTCAACCTCCAA-CGTTATAGTTTTGCCAGTCAA 88667 Query 480752 AGTCTTAACGAAAATTTG 480769 || || || ||||| || Sbjct 88668 CGTTTTCACAAAAATCTG 88685 Score = 86.0 bits (94), Expect = 4e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| || || || |||||||| ||||| |||||||| ||||| || || Sbjct 89794 CCAGCAAAAATTAGGCGCTGCTGATCAGGTGGAATACCTTCCTTATCTTGGATTTTGGCC 89853 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| ||| ||||| || | | | || ||||| ||||| ||||| || || Sbjct 89854 TTCACATTTTCGATAGTGTCGGAAGCTTCAACCTCGAGGGTGATAGTCTTACCAGTCAGT 89913 Query 480753 GTCTTAACGAAAATTTG 480769 || || ||||||||||| Sbjct 89914 GTTTTCACGAAAATTTG 89930 >seq642 Length=34890 Score = 109 bits (120), Expect = 4e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 474659 CCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTT 474718 || ||| ||||||| | |||||| | | |||||||| | | || || ||| | Sbjct 16605 CCAGAAGAAATTTCAGCTATGGTTCTTACTAAAATGAAGAATATTGCTGAATCGTATTTG 16546 Query 474719 GGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGT 474778 ||| ||||||| | |||| | | || || || || || || |||||| | |||||| Sbjct 16545 GGAAAAGAAGTTAAGCATGCTATCGTGACAGTGCCCGCTTACTTCAATGATGCGCAACGT 16486 Query 474779 CAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAA 474838 || || || ||||||||||| |||||||| |||||||| | || || || |||||| Sbjct 16485 CAGGCTACCAAAGATGCGGGTTCTATTGCAGGCCTTAATGTCGTGCGAATAATCAATGAA 16426 Query 474839 CCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || || || || |||| |||||||| || || || Sbjct 16425 CCCACGGCTGCTGCTATTGCATATGGTCTAGACAAAAA 16388 Score = 98.7 bits (108), Expect = 6e-15 Identities = 170/246 (69%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 474355 TTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGG 474414 |||||||||||| | |||| ||||||| ||| ||||| || || ||||| || || Sbjct 16977 TTACAGTTGTGTCGGCGTTTATAAAAATGGACGAGTGGAAATTATAGCTAATGAACAGGG 16918 Query 474415 TAATAGAACAACACCATCATATGTTTCTT---TTACTGAAA---CTGAACATCTTATTGG 474468 ||| |||| ||||||||||||||| | | | | |||| ||||| ||| ||||| Sbjct 16917 TAACAGAATTACACCATCATATGTTGCATTCATGAGCGAAAGTGGTGAACGTCTGATTGG 16858 Query 474469 AGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTGATGCTAAAAG 474528 ||||| || || |||| | | ||||| | ||||| | || |||| |||| | Sbjct 16857 TGATGCAGCAAAGAATCAGTTAACTACCAATCCAGAAAATACAGTCTTCGATGTTAAACG 16798 Query 474529 ATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCATTGGCCTTT 474588 ||||| ||||| | | ||| | | || || ||||| | ||||||||||| Sbjct 16797 TTTGATCGGTCGAGAATACTCGGATCCAAAAGTTCAGCAAGATATTAGACATTGGCCTTT 16738 Query 474589 TAAGGT 474594 |||||| Sbjct 16737 TAAGGT 16732 >seq5048 Length=651 Score = 98.7 bits (108), Expect = 6e-15 Identities = 145/201 (72%), Gaps = 11/201 (5%) Strand=Plus/Plus Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 ||||| ||||||||||| |||||||| || || || ||||| | | || ||||| ||| Sbjct 449 ATTTTAGATGCTAAAAGGTTGATTGGACGCAAGTTCGATGACTCATCAGTACAATCAGAT 508 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAAT---GTTGGTGGTAAACCATATATAGAAG-- 474626 ||| || |||||||| || || || ||| | |||||| ||||| | | ||| Sbjct 509 ATGAAACACTGGCCTTTCAAAGTCATTAATGCCGGTGGTGGCAAACCTAAAGTCCAAGTT 568 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCA--CCGGAACAAATTTCTTCAATGGTTTT 474684 | || | ||||||||| || || ||||| |||||| ||||||| || ||||| || Sbjct 569 GAGTATA--AAGGTGAAAC--AAAAACTTTCACGCCGGAAGAAATTTCCTCGATGGTGTT 624 Query 474685 AGCCAAAATGAAACAAACCGC 474705 | ||||||||| | || || Sbjct 625 GGTAAAAATGAAAGAGACAGC 645 >seq96 Length=108103 Score = 95.1 bits (104), Expect = 8e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 355393 TTGAGTTGTGTGAAGATATATCGTGCACTTGCATTATCTTTGCCTCCACTTAATCTTGTA 355452 ||||| |||||||| ||||| || | ||| ||| ||||||| || || ||| | |||| Sbjct 24317 TTGAGCTGTGTGAAAATATAACGAGGACTAGCACTATCTTTTCCACCTTGTAAGCGTGTA 24258 Query 355453 CCAAATTGACCATTGGGAAGTAATAAATTTATGTTGTTACTTCCAACATAATTTTGTGCC 355512 ||||| || ||| | || || | |||||||||||| || |||||||||| ||| || Sbjct 24257 CCAAACTGGCCAATAGGTAGCAGTAAATTTATGTTATTTGAACCAACATAATCTTGAGCT 24198 Query 355513 ATTTTTATTATAGTT 355527 | |||| ||| ||| Sbjct 24197 AAATTTACTATTGTT 24183 >seq538 Length=41608 Score = 93.3 bits (102), Expect = 3e-13 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 ||||| ||||||||||| | || ||||| || || ||||||||||||||||| |||||| Sbjct 23574 GGTATACCTCCTGCTCCTCGTGGTGTTCCACAGATCGAAGTTACTTTTGATATAGATGCA 23633 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATA 476180 || ||||| |||||||| | ||| | |||| Sbjct 23634 AACGGTATCGTTAATGTTTCAGCTAGAGATA 23664 >seq59 Length=128137 Score = 93.3 bits (102), Expect = 3e-13 Identities = 112/153 (73%), Gaps = 6/153 (4%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 |||||||| ||||| || |||||||| ||||| || |||||||||||||| || || Sbjct 71872 CCAGCAAATATAAGGCGCTGTTGATCCGGAGGGATGCCTTCCTTGTCTTGGATTTTAGCC 71931 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| |||||| || || | | ||||| ||||| |||||||| || | | Sbjct 71932 TTAACATTTTCAATTGTGTCTGACGATTCCACCTCAAGTGTAATTGTTTTACCAGTCAAA 71991 Query 480753 GTCTTAACGAAAATTTGGAACGACATCTTTAAT 480785 || ||||| |||||||| |||||||||| Sbjct 71992 GTTTTAACAAAAATTTG------CATCTTTAAT 72018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267931353545144