Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq283 331 1e-85 seq867 181 1e-40 seq22 176 6e-39 seq642 149 8e-31 seq59 125 9e-24 seq546 104 3e-17 >seq283 Length=65264 Score = 331 bits (366), Expect = 1e-85 Identities = 571/827 (69%), Gaps = 2/827 (0%) Strand=Plus/Plus Query 196052 AATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCT 196111 |||||| | || ||||| ||| | | |||||||||||| | || ||||| || | || Sbjct 45662 AATCCTCGTGCCCTTCGGCGGTTGCGTACTGCATGTGAAAGAGCAAAACGGACGTTGTCC 45721 Query 196112 TCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACA 196171 || | ||| ||| | ||||| ||||| |||| || || || |||||||| ||| Sbjct 45722 AGCTCGTCACAAGCAAGTATCGAGATCGATTCACTGTTCGAGGGTATCGACTTCTACACA 45781 Query 196172 ACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAA 196231 | |||||| ||||| |||||||||||| | | | |||||||| | ||||| Sbjct 45782 AGTATTACTCGTGCCCGTTTTGAAGAGCTCTGCGCAGATTTGTTCCGCTCAACAATGGAT 45841 Query 196232 CCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTC 196291 || || ||| ||| | ||||| ||||| ||||||||| || | || | || ||||| Sbjct 45842 CCAGTAGAAAAAGCTTTGCGTGATGCAAAAATGGATAAGGCTCAAGTGCACGACATTGTT 45901 Query 196292 CTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAAT 196351 || || || || || || |||||||| || | || || | ||||| ||| ||| | Sbjct 45902 CTAGTTGGTGGCTCTACTCGTATTCCTAAAGTGCAGAAGTTACTTTCCGACTTTTTCTCT 45961 Query 196352 AATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTT 196411 ||||| || || || | || || || |||||||| ||||| ||||| || | ||| Sbjct 45962 GGCAAAGAGTTGAATAAGAGTATTAATCCCGATGAAGCTGTTGCATATGGGGCATCAGTT 46021 Query 196412 CAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGAT 196471 ||||| |||||| | || || | | | | | || || |||||||| || || ||| Sbjct 46022 CAGGCAGCTATTTTATCTGGAGATAAGTCTGAAGCTGTGCAGGATCTTCTACTTCTAGAT 46081 Query 196472 GTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGAT 196531 || || || | ||| |||| ||||||| || || ||||| |||||| | ||| | Sbjct 46082 GTCGCTCCTCTCTCCTTGGGAATTGAAACTGCTGGCGGTGTAATGACTGCCCTCATTAAG 46141 Query 196532 AGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAA 196591 | || || || || || ||||| | | ||| ||| | ||||||||||| || || Sbjct 46142 CGTAATACTACCATCCCAACTAAAACGTCCCAAACCTTCACTACGTATTCCGACAACCAG 46201 Query 196592 CCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTA 196651 || ||||| ||||| || |||||||| || || | | || || || |||| Sbjct 46202 CCTGGTGTGTTGATTCAGGTTTATGAAGGTGAGCGAGCAATGACTAAAGACAATAATCTG 46261 Query 196652 CTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAAT 196711 ||||| | ||||| ||| | || || ||| |||| ||| ||||||| || || ||| | Sbjct 46262 CTTGGTAAATTCGAGTTGTCTGGAATCCCACCTGCTCCCCGAGGTGTCCCTCAAATTGAA 46321 Query 196712 GTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCT 196771 || || ||||| || || || || || || || || | ||| | ||||| | || Sbjct 46322 GTAACGTTTGATATTGATGCGAACGGTATCCTGAATGTATCTGCTCAAGACAAATCAACT 46381 Query 196772 GGCAAATCTGAA-AAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAAT 196830 |||||| | ||| |||||| ||||| ||||| ||||| |||| || ||||| ||||| Sbjct 46382 GGCAAA-CAGAACAAGATTACCATTACGAATGATAAGGGCAGGCTGTCGAAGGATGAAAT 46440 Query 196831 TGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877 || | ||||| || || || || ||||| | | ||| || |||| Sbjct 46441 CGAGAGGATGGTACAGGAAGCTGAGAAGTATAAAGCAGATGATGAGG 46487 Score = 109 bits (120), Expect = 7e-19 Identities = 114/147 (78%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 195704 AAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAG 195763 ||||| || || || || || |||||||| || | |||||| || || ||||| |||||| Sbjct 45145 AAAGACGCTGTAGTCACAGTCCCTGCTTATTTTAATGATTCCCAGCGTCAGGCAACAAAG 45204 Query 195764 GACGCTGCTGCTATTGCGGGTCTAAAC-TGTCTTAGAATTATCAATGAACCAACAGCGGC 195822 || | | ||| ||||||||||| ||| ||| | | ||||| |||||||| ||||| || Sbjct 45205 GATTCAGGTGCCATTGCGGGTCTGAACGTGT-TGCGTATTATTAATGAACCTACAGCAGC 45263 Query 195823 TGCAATTGCTTATGGTCTGGACAAGAA 195849 |||||||| |||||| | || || || Sbjct 45264 AGCAATTGCCTATGGTTTAGATAAAAA 45290 >seq867 Length=25794 Score = 181 bits (200), Expect = 1e-40 Identities = 405/602 (67%), Gaps = 7/602 (1%) Strand=Plus/Plus Query 195297 AAGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATC 195356 |||| ||||| || || ||||| ||||| || ||||||||||| | ||| ||| || Sbjct 13698 AAGCAATTGGAATTGACTTAGGTACTACGTATAGTTGTGTTGGTGTTTATCAATATGGTC 13757 Query 195357 GTGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTA 195416 | ||||| || || | ||||||||||| ||| || || ||||| || ||||| |||| Sbjct 13758 GAGTAGAAATAATAGCTAATGACCAAGGCAACAAAACTACGCCATCATATGTTGCATTTA 13817 Query 195417 CAGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCA 195476 | || | ||||||| | |||| ||| | ||| | |||| |||| || || | Sbjct 13818 CGGAAAGTGAACGTTTAATTGGTGATTCAGCATATGATCAAGTAGCTCGTAATCCAGAAA 13877 Query 195477 ATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAG 195536 |||| | ||| || || | || || || ||||| ||| ||||| |||| Sbjct 13878 ATACAATTTTTTCAATAAAACGATTGATAGGACGAAAGTTAAACGATCCAAAAGTTCAAG 13937 Query 195537 ACGATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTA 195596 | ||||| ||| | | | |||| || | | || || || || Sbjct 13938 AAGATATGCGTTTATGGCCATTTAAAGTAATTTC---TAAAAATGGCAAACCAGCAATCG 13994 Query 195597 ATGTTGAATTTCACGGTGAG-AAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTG 195655 | || |||||| | ||| || |||| ||| |||| ||||||||||| |||||| | Sbjct 13995 AAGTAGAATTTAAGAATGAACAACGAACA-TTTACTCCAGAAGAAATTTCATCTATGATT 14053 Query 195656 TTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTT 195715 |||| ||| ||||| || || || ||| ||| |||| ||||| | | |||||| Sbjct 14054 TTGAGTAAAATGAAAGAAACAGCTGAAATTTTTTTGGGATTTACTGTAAGTAAAGCAGTT 14113 Query 195716 GTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCT 195775 | || ||||| || || || | |||| || ||||| ||||| || ||||||| | Sbjct 14114 ATCACAGTACCAGCATATTTTAATGATAGTCAGCGACAAGCGACTAAAGACGCTGGAATT 14173 Query 195776 ATTGCGGGTCTAAACTGTCTT-AGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTA 195834 || || || || || ||||| ||||||| ||||| |||||||| || ||| | || || Sbjct 14174 ATCGCTGGATTAGAC-GTCTTGCGAATTATTAATGAGCCAACAGCAGCAGCATTAGCATA 14232 Query 195835 TGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGG 195894 ||| || || ||||| | | ||| ||||||| | || |||||||| || || || Sbjct 14233 TGGCCTTGATAAGAAATTAAAAAATGATCAAAATGTTCTCATATTTGATCTTGGAGGAGG 14292 Query 195895 TA 195896 || Sbjct 14293 TA 14294 >seq22 Length=171845 Score = 176 bits (194), Expect = 6e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||| ||||| || ||||| || || ||||| | ||||| ||| | || Sbjct 88348 ATGCAGATATTTGTCAAAACGCTGACTGGCAAGACGATCACTTTGGAGGTAGAGGCTTCT 88289 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || |||||||||||||||| |||||||| ||||| ||||| ||||| Sbjct 88288 GATACGATTGAAAATGTCAAAGCCAAGATTCAGGATAAGGAGGGCATCCCACCAGATCAA 88229 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 |||||| | |||||||| || || ||| | |||||||| || || || |||| ||||| Sbjct 88228 CAACGATTGATTTTTGCCGGAAAGCAGTTGGAAGATGGCCGCACACTGTCTGACTACAAT 88169 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 ||||||| ||||| || || || | ||||| | ||||| ||||| Sbjct 88168 ATTCAAAAAGAGTCCACACTTCATTTGGTTCTCCGTCTTCGTGGTGG 88122 Score = 156 bits (172), Expect = 6e-33 Identities = 121/144 (84%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171859 AGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCG 171918 ||||||||||| || |||||||| || ||||| || |||||||||||||||||||| | Sbjct 89936 AGTATGCAAATTTTCGTGAAAACACTGACTGGTAAGACTATCACCCTCGAGGTTGAAGCT 89877 Query 171919 TCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGAT 171978 || ||||| ||||| || | || ||||| || |||||||||||||| |||||||| ||| Sbjct 89876 TCCGACACTATCGAAAATGTGAAGGCCAAAATCCAAGATAAGGAAGGTATTCCACCTGAT 89817 Query 171979 CAGCAACGACTTATTTTTGCTGGT 172002 ||||| || || |||||||||||| Sbjct 89816 CAGCAGCGCCTAATTTTTGCTGGT 89793 Score = 143 bits (158), Expect = 4e-29 Identities = 120/147 (82%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || |||||||||| ||||| || || || ||||| ||||| |||||| | || |||||| Sbjct 89028 GTGGTATGCAAATATTTGTAAAGACTCTGACTGGTAAAACGATCACCTTGGAAGTTGAGG 88969 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| ||||| || | ||||| ||||||||||| |||||||| ||||| || | Sbjct 88968 CTTCTGACACTATCGAAAATGTTAAAGCAAAGATTCAAGACAAGGAAGGAATTCCGCCGG 88909 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTA 172003 | ||||| |||||||||||||| |||| Sbjct 88908 ACCAGCAGCGACTTATTTTTGCCGGTA 88882 Score = 129 bits (142), Expect = 8e-25 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||||||||| ||||| || || || |||||||| || | || || || | || Sbjct 89579 ATGCAAATCTTTGTCAAAACACTGACCGGCAAAACTATAACGTTGGAAGTGGAAGCTTCT 89520 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | ||||| |||||||| |||||||||||||||||||| |||||| Sbjct 89519 GATACCATTGAGAATGTAAAAGCTAAGATTCAGGATAAGGAAGGCATTCCACCGGATCAG 89460 Query 171982 CAACGACTTATTTTTGCTGGT 172002 ||||| || || ||||||||| Sbjct 89459 CAACGCCTAATCTTTGCTGGT 89439 Score = 113 bits (124), Expect = 6e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| | ||||| |||||||| || | |||||||| | ||| Sbjct 88688 ATGCAGATTTTTGTGAAAACGTTGACTGGCAAAACTATAACGTTGGAGGTTGAAGCATCA 88629 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | || || || ||||| || |||||||| ||||| || || || Sbjct 88628 GATACAATTGAAAATGTGAAGGCAAAAATTCAGGACAAGGAAGGTATTCCCCCTGACCAA 88569 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || ||||||||||| |||| Sbjct 88568 CAGCGTCTTATTTTTGCGGGTA 88547 >seq642 Length=34890 Score = 149 bits (164), Expect = 8e-31 Identities = 175/234 (75%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 195617 AAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACT 195676 |||||| || ||||| ||||||||||| ||||||| | | ||| |||||| | | | Sbjct 16620 AAGAAAACCTTCGCTCCAGAAGAAATTTCAGCTATGGTTCTTACTAAAATGAAGAATATT 16561 Query 195677 GCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTC 195736 || ||||| | |||| ||| || || |||| | ||||| || || ||||||||| Sbjct 16560 GCTGAATCGTATTTGGGAAAAGAAGTTAAGCATGCTATCGTGACAGTGCCCGCTTACTTC 16501 Query 195737 AGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTT 195796 | |||| | ||||| ||||| || || || || | | ||||||| || || || |||| | Sbjct 16500 AATGATGCGCAACGTCAGGCTACCAAAGATGCGGGTTCTATTGCAGGCCTTAA-TGTCGT 16442 Query 195797 A-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAA 195849 |||| ||||||||||| || || ||||| ||||| |||||||| ||||| || Sbjct 16441 GCGAATAATCAATGAACCCACGGCTGCTGCTATTGCATATGGTCTAGACAAAAA 16388 >seq59 Length=128137 Score = 125 bits (138), Expect = 9e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| ||||| | ||||| ||||| || || || ||||| || |||||| Sbjct 72011 ATGCAAATTTTTGTTAAAACTTTGACTGGTAAAACAATTACACTTGAGGTGGAATCGTCA 71952 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | || || || || ||||| ||||||||||| || || ||||| Sbjct 71951 GACACAATTGAAAATGTTAAGGCTAAAATCCAAGACAAGGAAGGCATCCCTCCGGATCAA 71892 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || ||||| |||||||||| Sbjct 71891 CAGCGCCTTATATTTGCTGGTA 71870 >seq546 Length=41299 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||| ||||| | || || ||||| ||||| || || || || | || Sbjct 26590 ATGCAGATATTTGTTAAAACTTTAACCGGCAAAACAATCACTCTTGAAGTAGAAGCATCT 26531 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | ||| | || ||||| || || ||||||||||| || |||||| Sbjct 26530 GATACTATCGAAAATGTAAAATCTAAAATTCAGGACAAAGAAGGCATTCCGCCTGATCAG 26471 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||| |||| |||||||| |||| Sbjct 26470 CAAAGACTCATTTTTGCAGGTA 26449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657814885888160