Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24]
5,778 sequences; 75,392,092 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq283 331 1e-85
seq867 181 1e-40
seq22 176 6e-39
seq642 149 8e-31
seq59 125 9e-24
seq546 104 3e-17
>seq283
Length=65264
Score = 331 bits (366), Expect = 1e-85
Identities = 571/827 (69%), Gaps = 2/827 (0%)
Strand=Plus/Plus
Query 196052 AATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCT 196111
|||||| | || ||||| ||| | | |||||||||||| | || ||||| || | ||
Sbjct 45662 AATCCTCGTGCCCTTCGGCGGTTGCGTACTGCATGTGAAAGAGCAAAACGGACGTTGTCC 45721
Query 196112 TCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACA 196171
|| | ||| ||| | ||||| ||||| |||| || || || |||||||| |||
Sbjct 45722 AGCTCGTCACAAGCAAGTATCGAGATCGATTCACTGTTCGAGGGTATCGACTTCTACACA 45781
Query 196172 ACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAA 196231
| |||||| ||||| |||||||||||| | | | |||||||| | |||||
Sbjct 45782 AGTATTACTCGTGCCCGTTTTGAAGAGCTCTGCGCAGATTTGTTCCGCTCAACAATGGAT 45841
Query 196232 CCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTC 196291
|| || ||| ||| | ||||| ||||| ||||||||| || | || | || |||||
Sbjct 45842 CCAGTAGAAAAAGCTTTGCGTGATGCAAAAATGGATAAGGCTCAAGTGCACGACATTGTT 45901
Query 196292 CTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAAT 196351
|| || || || || || |||||||| || | || || | ||||| ||| ||| |
Sbjct 45902 CTAGTTGGTGGCTCTACTCGTATTCCTAAAGTGCAGAAGTTACTTTCCGACTTTTTCTCT 45961
Query 196352 AATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTT 196411
||||| || || || | || || || |||||||| ||||| ||||| || | |||
Sbjct 45962 GGCAAAGAGTTGAATAAGAGTATTAATCCCGATGAAGCTGTTGCATATGGGGCATCAGTT 46021
Query 196412 CAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGAT 196471
||||| |||||| | || || | | | | | || || |||||||| || || |||
Sbjct 46022 CAGGCAGCTATTTTATCTGGAGATAAGTCTGAAGCTGTGCAGGATCTTCTACTTCTAGAT 46081
Query 196472 GTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGAT 196531
|| || || | ||| |||| ||||||| || || ||||| |||||| | ||| |
Sbjct 46082 GTCGCTCCTCTCTCCTTGGGAATTGAAACTGCTGGCGGTGTAATGACTGCCCTCATTAAG 46141
Query 196532 AGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAA 196591
| || || || || || ||||| | | ||| ||| | ||||||||||| || ||
Sbjct 46142 CGTAATACTACCATCCCAACTAAAACGTCCCAAACCTTCACTACGTATTCCGACAACCAG 46201
Query 196592 CCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTA 196651
|| ||||| ||||| || |||||||| || || | | || || || ||||
Sbjct 46202 CCTGGTGTGTTGATTCAGGTTTATGAAGGTGAGCGAGCAATGACTAAAGACAATAATCTG 46261
Query 196652 CTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAAT 196711
||||| | ||||| ||| | || || ||| |||| ||| ||||||| || || ||| |
Sbjct 46262 CTTGGTAAATTCGAGTTGTCTGGAATCCCACCTGCTCCCCGAGGTGTCCCTCAAATTGAA 46321
Query 196712 GTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCT 196771
|| || ||||| || || || || || || || || | ||| | ||||| | ||
Sbjct 46322 GTAACGTTTGATATTGATGCGAACGGTATCCTGAATGTATCTGCTCAAGACAAATCAACT 46381
Query 196772 GGCAAATCTGAA-AAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAAT 196830
|||||| | ||| |||||| ||||| ||||| ||||| |||| || ||||| |||||
Sbjct 46382 GGCAAA-CAGAACAAGATTACCATTACGAATGATAAGGGCAGGCTGTCGAAGGATGAAAT 46440
Query 196831 TGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877
|| | ||||| || || || || ||||| | | ||| || ||||
Sbjct 46441 CGAGAGGATGGTACAGGAAGCTGAGAAGTATAAAGCAGATGATGAGG 46487
Score = 109 bits (120), Expect = 7e-19
Identities = 114/147 (78%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 195704 AAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAG 195763
||||| || || || || || |||||||| || | |||||| || || ||||| ||||||
Sbjct 45145 AAAGACGCTGTAGTCACAGTCCCTGCTTATTTTAATGATTCCCAGCGTCAGGCAACAAAG 45204
Query 195764 GACGCTGCTGCTATTGCGGGTCTAAAC-TGTCTTAGAATTATCAATGAACCAACAGCGGC 195822
|| | | ||| ||||||||||| ||| ||| | | ||||| |||||||| ||||| ||
Sbjct 45205 GATTCAGGTGCCATTGCGGGTCTGAACGTGT-TGCGTATTATTAATGAACCTACAGCAGC 45263
Query 195823 TGCAATTGCTTATGGTCTGGACAAGAA 195849
|||||||| |||||| | || || ||
Sbjct 45264 AGCAATTGCCTATGGTTTAGATAAAAA 45290
>seq867
Length=25794
Score = 181 bits (200), Expect = 1e-40
Identities = 405/602 (67%), Gaps = 7/602 (1%)
Strand=Plus/Plus
Query 195297 AAGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATC 195356
|||| ||||| || || ||||| ||||| || ||||||||||| | ||| ||| ||
Sbjct 13698 AAGCAATTGGAATTGACTTAGGTACTACGTATAGTTGTGTTGGTGTTTATCAATATGGTC 13757
Query 195357 GTGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTA 195416
| ||||| || || | ||||||||||| ||| || || ||||| || ||||| ||||
Sbjct 13758 GAGTAGAAATAATAGCTAATGACCAAGGCAACAAAACTACGCCATCATATGTTGCATTTA 13817
Query 195417 CAGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCA 195476
| || | ||||||| | |||| ||| | ||| | |||| |||| || || |
Sbjct 13818 CGGAAAGTGAACGTTTAATTGGTGATTCAGCATATGATCAAGTAGCTCGTAATCCAGAAA 13877
Query 195477 ATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAG 195536
|||| | ||| || || | || || || ||||| ||| ||||| ||||
Sbjct 13878 ATACAATTTTTTCAATAAAACGATTGATAGGACGAAAGTTAAACGATCCAAAAGTTCAAG 13937
Query 195537 ACGATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTA 195596
| ||||| ||| | | | |||| || | | || || || ||
Sbjct 13938 AAGATATGCGTTTATGGCCATTTAAAGTAATTTC---TAAAAATGGCAAACCAGCAATCG 13994
Query 195597 ATGTTGAATTTCACGGTGAG-AAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTG 195655
| || |||||| | ||| || |||| ||| |||| ||||||||||| |||||| |
Sbjct 13995 AAGTAGAATTTAAGAATGAACAACGAACA-TTTACTCCAGAAGAAATTTCATCTATGATT 14053
Query 195656 TTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTT 195715
|||| ||| ||||| || || || ||| ||| |||| ||||| | | ||||||
Sbjct 14054 TTGAGTAAAATGAAAGAAACAGCTGAAATTTTTTTGGGATTTACTGTAAGTAAAGCAGTT 14113
Query 195716 GTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCT 195775
| || ||||| || || || | |||| || ||||| ||||| || ||||||| |
Sbjct 14114 ATCACAGTACCAGCATATTTTAATGATAGTCAGCGACAAGCGACTAAAGACGCTGGAATT 14173
Query 195776 ATTGCGGGTCTAAACTGTCTT-AGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTA 195834
|| || || || || ||||| ||||||| ||||| |||||||| || ||| | || ||
Sbjct 14174 ATCGCTGGATTAGAC-GTCTTGCGAATTATTAATGAGCCAACAGCAGCAGCATTAGCATA 14232
Query 195835 TGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGG 195894
||| || || ||||| | | ||| ||||||| | || |||||||| || || ||
Sbjct 14233 TGGCCTTGATAAGAAATTAAAAAATGATCAAAATGTTCTCATATTTGATCTTGGAGGAGG 14292
Query 195895 TA 195896
||
Sbjct 14293 TA 14294
>seq22
Length=171845
Score = 176 bits (194), Expect = 6e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || ||||| ||||| || ||||| || || ||||| | ||||| ||| | ||
Sbjct 88348 ATGCAGATATTTGTCAAAACGCTGACTGGCAAGACGATCACTTTGGAGGTAGAGGCTTCT 88289
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| || || || || |||||||||||||||| |||||||| ||||| ||||| |||||
Sbjct 88288 GATACGATTGAAAATGTCAAAGCCAAGATTCAGGATAAGGAGGGCATCCCACCAGATCAA 88229
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|||||| | |||||||| || || ||| | |||||||| || || || |||| |||||
Sbjct 88228 CAACGATTGATTTTTGCCGGAAAGCAGTTGGAAGATGGCCGCACACTGTCTGACTACAAT 88169
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088
||||||| ||||| || || || | ||||| | ||||| |||||
Sbjct 88168 ATTCAAAAAGAGTCCACACTTCATTTGGTTCTCCGTCTTCGTGGTGG 88122
Score = 156 bits (172), Expect = 6e-33
Identities = 121/144 (84%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 171859 AGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCG 171918
||||||||||| || |||||||| || ||||| || |||||||||||||||||||| |
Sbjct 89936 AGTATGCAAATTTTCGTGAAAACACTGACTGGTAAGACTATCACCCTCGAGGTTGAAGCT 89877
Query 171919 TCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGAT 171978
|| ||||| ||||| || | || ||||| || |||||||||||||| |||||||| |||
Sbjct 89876 TCCGACACTATCGAAAATGTGAAGGCCAAAATCCAAGATAAGGAAGGTATTCCACCTGAT 89817
Query 171979 CAGCAACGACTTATTTTTGCTGGT 172002
||||| || || ||||||||||||
Sbjct 89816 CAGCAGCGCCTAATTTTTGCTGGT 89793
Score = 143 bits (158), Expect = 4e-29
Identities = 120/147 (82%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916
|| |||||||||| ||||| || || || ||||| ||||| |||||| | || ||||||
Sbjct 89028 GTGGTATGCAAATATTTGTAAAGACTCTGACTGGTAAAACGATCACCTTGGAAGTTGAGG 88969
Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976
| || ||||| ||||| || | ||||| ||||||||||| |||||||| ||||| || |
Sbjct 88968 CTTCTGACACTATCGAAAATGTTAAAGCAAAGATTCAAGACAAGGAAGGAATTCCGCCGG 88909
Query 171977 ATCAGCAACGACTTATTTTTGCTGGTA 172003
| ||||| |||||||||||||| ||||
Sbjct 88908 ACCAGCAGCGACTTATTTTTGCCGGTA 88882
Score = 129 bits (142), Expect = 8e-25
Identities = 113/141 (80%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||||||||| ||||| || || || |||||||| || | || || || | ||
Sbjct 89579 ATGCAAATCTTTGTCAAAACACTGACCGGCAAAACTATAACGTTGGAAGTGGAAGCTTCT 89520
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| || || || || | ||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 89519 GATACCATTGAGAATGTAAAAGCTAAGATTCAGGATAAGGAAGGCATTCCACCGGATCAG 89460
Query 171982 CAACGACTTATTTTTGCTGGT 172002
||||| || || |||||||||
Sbjct 89459 CAACGCCTAATCTTTGCTGGT 89439
Score = 113 bits (124), Expect = 6e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || ||||||||||| | ||||| |||||||| || | |||||||| | |||
Sbjct 88688 ATGCAGATTTTTGTGAAAACGTTGACTGGCAAAACTATAACGTTGGAGGTTGAAGCATCA 88629
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | || || || ||||| || |||||||| ||||| || || ||
Sbjct 88628 GATACAATTGAAAATGTGAAGGCAAAAATTCAGGACAAGGAAGGTATTCCCCCTGACCAA 88569
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
|| || ||||||||||| ||||
Sbjct 88568 CAGCGTCTTATTTTTGCGGGTA 88547
>seq642
Length=34890
Score = 149 bits (164), Expect = 8e-31
Identities = 175/234 (75%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 195617 AAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACT 195676
|||||| || ||||| ||||||||||| ||||||| | | ||| |||||| | | |
Sbjct 16620 AAGAAAACCTTCGCTCCAGAAGAAATTTCAGCTATGGTTCTTACTAAAATGAAGAATATT 16561
Query 195677 GCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTC 195736
|| ||||| | |||| ||| || || |||| | ||||| || || |||||||||
Sbjct 16560 GCTGAATCGTATTTGGGAAAAGAAGTTAAGCATGCTATCGTGACAGTGCCCGCTTACTTC 16501
Query 195737 AGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTT 195796
| |||| | ||||| ||||| || || || || | | ||||||| || || || |||| |
Sbjct 16500 AATGATGCGCAACGTCAGGCTACCAAAGATGCGGGTTCTATTGCAGGCCTTAA-TGTCGT 16442
Query 195797 A-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAA 195849
|||| ||||||||||| || || ||||| ||||| |||||||| ||||| ||
Sbjct 16441 GCGAATAATCAATGAACCCACGGCTGCTGCTATTGCATATGGTCTAGACAAAAA 16388
>seq59
Length=128137
Score = 125 bits (138), Expect = 9e-24
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| ||||| | ||||| ||||| || || || ||||| || ||||||
Sbjct 72011 ATGCAAATTTTTGTTAAAACTTTGACTGGTAAAACAATTACACTTGAGGTGGAATCGTCA 71952
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|||||||| || || | || || || || ||||| ||||||||||| || || |||||
Sbjct 71951 GACACAATTGAAAATGTTAAGGCTAAAATCCAAGACAAGGAAGGCATCCCTCCGGATCAA 71892
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
|| || ||||| ||||||||||
Sbjct 71891 CAGCGCCTTATATTTGCTGGTA 71870
>seq546
Length=41299
Score = 104 bits (114), Expect = 3e-17
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || ||||| ||||| | || || ||||| ||||| || || || || | ||
Sbjct 26590 ATGCAGATATTTGTTAAAACTTTAACCGGCAAAACAATCACTCTTGAAGTAGAAGCATCT 26531
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| || ||||| || | ||| | || ||||| || || ||||||||||| || ||||||
Sbjct 26530 GATACTATCGAAAATGTAAAATCTAAAATTCAGGACAAAGAAGGCATTCCGCCTGATCAG 26471
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||| |||| |||||||| ||||
Sbjct 26470 CAAAGACTCATTTTTGCAGGTA 26449
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657814885888160
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