Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24]
5,778 sequences; 75,392,092 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq22 136 7e-27
>seq22
Length=171845
Score = 136 bits (150), Expect = 7e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
|| || |||| ||| | ||| | |||||| |||||| ||||| || | || | |
Sbjct 88134 CGGAGAACCAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCAGACAGTGTGCGGCCA 88193
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || || || |||||||||||||| |||| |||||||| || || || || || |||
Sbjct 88194 TCTTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCTGGTGGGATGCCCTCCTTA 88253
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
|| || || |||| ||| | |||| ||| ||||| |||| ||| || || | ||| ||
Sbjct 88254 TCCTGAATCTTGGCTTTGACATTTTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATC 88313
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || |||||||| |||||||| |||||
Sbjct 88314 GTCTTGCCAGTCAGCGTTTTGACAAATATCTGCAT 88348
Score = 113 bits (124), Expect = 8e-20
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
||||||||||| | || ||| || || || || |||||||| || ||||| || || | |
Sbjct 88884 CCGGCAAAAATAAGTCGCTGCTGGTCCGGCGGAATTCCTTCCTTGTCTTGAATCTTTGCT 88943
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|| | |||| ||||| || |||| ||||||||| | || || |||||||| || ||
Sbjct 88944 TTAACATTTTCGATAGTGTCAGAAGCCTCAACTTCCAAGGTGATCGTTTTACCAGTCAGA 89003
Query 193341 GTTTTTACAAATATTTGCAT 193360
|| |||||||||||||||||
Sbjct 89004 GTCTTTACAAATATTTGCAT 89023
Score = 95.1 bits (104), Expect = 2e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| ||||| |||| | || ||||| || || || ||||| ||||| || || || | |
Sbjct 89440 CCAGCAAAGATTAGGCGTTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATCTTAGCT 89499
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|||| ||| ||| ||||| |||| || ||||| | ||||||||||| || || ||
Sbjct 89500 TTTACATTCTCAATGGTATCAGAAGCTTCCACTTCCAACGTTATAGTTTTGCCGGTCAGT 89559
Query 193341 GTTTTTACAAATATTTGCAT 193360
||||| ||||| ||||||||
Sbjct 89560 GTTTTGACAAAGATTTGCAT 89579
Score = 91.5 bits (100), Expect = 3e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| |||||||| | | |||||| ||||| || || ||||| || || || ||||| |
Sbjct 88549 CCCGCAAAAATAAGACGCTGTTGGTCAGGGGGAATACCTTCCTTGTCCTGAATTTTTGCC 88608
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|| | |||| ||| ||||| || | ||||| || | ||||||||||| || || | |
Sbjct 88609 TTCACATTTTCAATTGTATCTGATGCTTCAACCTCCAACGTTATAGTTTTGCCAGTCAAC 88668
Query 193341 GTTTTTACAAATATTTGCAT 193360
||||| ||||| || |||||
Sbjct 88669 GTTTTCACAAAAATCTGCAT 88688
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899589422460960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |