Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq546 132 9e-26 seq22 116 7e-21 seq59 109 1e-18 >seq546 Length=41299 Score = 132 bits (146), Expect = 9e-26 Identities = 118/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||| ||||| || | ||| || |||||||| || || |||||||| || || |||||| Sbjct 26449 TACCTGCAAAAATGAGTCTTTGCTGATCAGGCGGAATGCCTTCTTTGTCCTGAATTTTAG 26508 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||||| |||| ||| || | ||||||||| ||||| || ||||| || |||| Sbjct 26509 ATTTTACATTTTCGATAGTATCAGATGCTTCTACTTCAAGAGTGATTGTTTTGCCGGTTA 26568 Query 192515 ATGTTTTAATAAATATCTGCATTTTATT 192542 | ||||||| ||||||||||||||| || Sbjct 26569 AAGTTTTAACAAATATCTGCATTTTGTT 26596 >seq22 Length=171845 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | |||||| | || ||||| | || | |||||| ||||| || ||||| Sbjct 88122 CCACCACGAAGACGGAGAACCAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCAGAC 88181 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||| || |||| ||||| || || || ||||| || |||| |||||||| ||||| Sbjct 88182 AGTGTGCGGCCATCTTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCTGGTGGG 88241 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || || || ||||| || || || ||| ||||| || | ||| || | ||||| Sbjct 88242 ATGCCCTCCTTATCCTGAATCTTGGCTTTGACATTTTCAATCGTATCAGAAGCCTCTACC 88301 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | ||| || || || ||||| | ||||| | |||||||||||| Sbjct 88302 TCCAAAGTGATCGTCTTGCCAGTCAGCGTTTTGACAAATATCTGCAT 88348 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455 |||||||||||||| | || ||||| ||||| || ||||| ||||| || || ||| Sbjct 89439 ACCAGCAAAGATTAGGCGTTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATCTTAGC 89498 Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 ||||||||| || | ||| || | ||| ||||| | || || ||||| || || | Sbjct 89499 TTTTACATTCTCAATGGTATCAGAAGCTTCCACTTCCAACGTTATAGTTTTGCCGGTCAG 89558 Query 192516 TGTTTTAATAAATATCTGCAT 192536 |||||| | ||| || ||||| Sbjct 89559 TGTTTTGACAAAGATTTGCAT 89579 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455 ||||||||| |||| | ||| ||||||||||| || ||||| |||||||| ||||| Sbjct 89793 ACCAGCAAAAATTAGGCGCTGCTGATCAGGTGGAATACCTTCCTTATCTTGGATTTTGGC 89852 Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 || ||||| |||| || || | ||| || || || || || || |||||||| | Sbjct 89853 CTTCACATTTTCGATAGTGTCGGAAGCTTCAACCTCGAGGGTGATAGTCTTACCAGTCAG 89912 Query 192516 TGTTTTAATAAATATCTGCAT 192536 |||||| | || || ||||| Sbjct 89913 TGTTTTCACGAAAATTTGCAT 89933 >seq59 Length=128137 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| || | | ||||||||| || || || ||||| || ||||| |||||| Sbjct 71870 TACCAGCAAATATAAGGCGCTGTTGATCCGGAGGGATGCCTTCCTTGTCTTGGATTTTAG 71929 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 || ||||| || | ||||||||||| || || || ||||| ||||||||||| | Sbjct 71930 CCTTAACATTTTCAATTGTGTCTGACGATTCCACCTCAAGTGTAATTGTTTTACCAGTCA 71989 Query 192515 ATGTTTTAATAAATATCTGCATTTT 192539 | ||||||| ||| || ||||| || Sbjct 71990 AAGTTTTAACAAAAATTTGCATCTT 72014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984407118330300