Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24]
5,778 sequences; 75,392,092 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq546 132 9e-26
seq22 116 7e-21
seq59 109 1e-18
>seq546
Length=41299
Score = 132 bits (146), Expect = 9e-26
Identities = 118/148 (80%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||| ||||| || | ||| || |||||||| || || |||||||| || || ||||||
Sbjct 26449 TACCTGCAAAAATGAGTCTTTGCTGATCAGGCGGAATGCCTTCTTTGTCCTGAATTTTAG 26508
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
||||||||| |||| ||| || | ||||||||| ||||| || ||||| || ||||
Sbjct 26509 ATTTTACATTTTCGATAGTATCAGATGCTTCTACTTCAAGAGTGATTGTTTTGCCGGTTA 26568
Query 192515 ATGTTTTAATAAATATCTGCATTTTATT 192542
| ||||||| ||||||||||||||| ||
Sbjct 26569 AAGTTTTAACAAATATCTGCATTTTGTT 26596
>seq22
Length=171845
Score = 116 bits (128), Expect = 7e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369
||||| | |||||| | || ||||| | || | |||||| ||||| || |||||
Sbjct 88122 CCACCACGAAGACGGAGAACCAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCAGAC 88181
Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429
| ||| || |||| ||||| || || || ||||| || |||| |||||||| |||||
Sbjct 88182 AGTGTGCGGCCATCTTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCTGGTGGG 88241
Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489
|| || || ||||| || || || ||| ||||| || | ||| || | |||||
Sbjct 88242 ATGCCCTCCTTATCCTGAATCTTGGCTTTGACATTTTCAATCGTATCAGAAGCCTCTACC 88301
Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| | ||| || || || ||||| | ||||| | ||||||||||||
Sbjct 88302 TCCAAAGTGATCGTCTTGCCAGTCAGCGTTTTGACAAATATCTGCAT 88348
Score = 87.8 bits (96), Expect = 4e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455
|||||||||||||| | || ||||| ||||| || ||||| ||||| || || |||
Sbjct 89439 ACCAGCAAAGATTAGGCGTTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATCTTAGC 89498
Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515
||||||||| || | ||| || | ||| ||||| | || || ||||| || || |
Sbjct 89499 TTTTACATTCTCAATGGTATCAGAAGCTTCCACTTCCAACGTTATAGTTTTGCCGGTCAG 89558
Query 192516 TGTTTTAATAAATATCTGCAT 192536
|||||| | ||| || |||||
Sbjct 89559 TGTTTTGACAAAGATTTGCAT 89579
Score = 87.8 bits (96), Expect = 4e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455
||||||||| |||| | ||| ||||||||||| || ||||| |||||||| |||||
Sbjct 89793 ACCAGCAAAAATTAGGCGCTGCTGATCAGGTGGAATACCTTCCTTATCTTGGATTTTGGC 89852
Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515
|| ||||| |||| || || | ||| || || || || || || |||||||| |
Sbjct 89853 CTTCACATTTTCGATAGTGTCGGAAGCTTCAACCTCGAGGGTGATAGTCTTACCAGTCAG 89912
Query 192516 TGTTTTAATAAATATCTGCAT 192536
|||||| | || || |||||
Sbjct 89913 TGTTTTCACGAAAATTTGCAT 89933
>seq59
Length=128137
Score = 109 bits (120), Expect = 1e-18
Identities = 111/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || | | ||||||||| || || || ||||| || ||||| ||||||
Sbjct 71870 TACCAGCAAATATAAGGCGCTGTTGATCCGGAGGGATGCCTTCCTTGTCTTGGATTTTAG 71929
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
|| ||||| || | ||||||||||| || || || ||||| ||||||||||| |
Sbjct 71930 CCTTAACATTTTCAATTGTGTCTGACGATTCCACCTCAAGTGTAATTGTTTTACCAGTCA 71989
Query 192515 ATGTTTTAATAAATATCTGCATTTT 192539
| ||||||| ||| || ||||| ||
Sbjct 71990 AAGTTTTAACAAAAATTTGCATCTT 72014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984407118330300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |