Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24]
5,778 sequences; 75,392,092 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq546 132 9e-26
seq59 104 4e-17
seq22 98.7 2e-15
>seq546
Length=41299
Score = 132 bits (146), Expect = 9e-26
Identities = 118/148 (80%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||| |||||||| | ||| || || ||||| || || |||||||| || || ||||||
Sbjct 26449 TACCTGCAAAAATGAGTCTTTGCTGATCAGGCGGAATGCCTTCTTTGTCCTGAATTTTAG 26508
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| |||||||| || | ||||||||| ||||| || ||||| || ||||
Sbjct 26509 ATTTTACATTTTCGATAGTATCAGATGCTTCTACTTCAAGAGTGATTGTTTTGCCGGTTA 26568
Query 172048 ATGTTTTAATGAATATCTGCATTTTATT 172075
| ||||||| |||||||||||||| ||
Sbjct 26569 AAGTTTTAACAAATATCTGCATTTTGTT 26596
>seq59
Length=128137
Score = 104 bits (114), Expect = 4e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||||||||| || | | |||||| || || || || ||||| || ||||| ||||||
Sbjct 71870 TACCAGCAAATATAAGGCGCTGTTGATCCGGAGGGATGCCTTCCTTGTCTTGGATTTTAG 71929
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|| ||||| || || ||||||||||| || || || ||||| ||||||||||| |
Sbjct 71930 CCTTAACATTTTCAATTGTGTCTGACGATTCCACCTCAAGTGTAATTGTTTTACCAGTCA 71989
Query 172048 ATGTTTTAATGAATATCTGCATTTT 172072
| ||||||| || || ||||| ||
Sbjct 71990 AAGTTTTAACAAAAATTTGCATCTT 72014
>seq22
Length=171845
Score = 98.7 bits (108), Expect = 2e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902
||||| | ||| || | || ||||| | || | |||||| |||||| || || ||
Sbjct 88122 CCACCACGAAGACGGAGAACCAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCAGAC 88181
Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962
| | || | || ||||| || || || |||||||| |||| ||||| || |||||
Sbjct 88182 AGTGTGCGGCCATCTTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCTGGTGGG 88241
Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022
|| || || ||||| || || || ||| ||||| || ||||| || | |||||
Sbjct 88242 ATGCCCTCCTTATCCTGAATCTTGGCTTTGACATTTTCAATCGTATCAGAAGCCTCTACC 88301
Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| | ||| || || || ||||| | ||||| | |||||||||||
Sbjct 88302 TCCAAAGTGATCGTCTTGCCAGTCAGCGTTTTGACAAATATCTGCAT 88348
Score = 96.9 bits (106), Expect = 6e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988
|||||||||||||| | ||| || |||||||| || ||||| |||||||| |||||
Sbjct 89793 ACCAGCAAAAATTAGGCGCTGCTGATCAGGTGGAATACCTTCCTTATCTTGGATTTTGGC 89852
Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048
|| ||||| ||||| || || | ||| || || || || || || |||||||| |
Sbjct 89853 CTTCACATTTTCGATAGTGTCGGAAGCTTCAACCTCGAGGGTGATAGTCTTACCAGTCAG 89912
Query 172049 TGTTTTAATGAATATCTGCAT 172069
|||||| | ||| || |||||
Sbjct 89913 TGTTTTCACGAAAATTTGCAT 89933
Score = 86.0 bits (94), Expect = 1e-11
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||| |||||||| | | |||||||||||| || || ||||| || || || |||||
Sbjct 88547 TACCCGCAAAAATAAGACGCTGTTGGTCAGGGGGAATACCTTCCTTGTCCTGAATTTTTG 88606
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|| ||||| || |||||||| | ||| || || | || || ||||| ||||| |
Sbjct 88607 CCTTCACATTTTCAATTGTATCTGATGCTTCAACCTCCAACGTTATAGTTTTGCCAGTCA 88666
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
| ||||| | || ||||||||
Sbjct 88667 ACGTTTTCACAAAAATCTGCAT 88688
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905070626552400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |