Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4836 89.7 6e-12 >seq4836 Length=696 Score = 89.7 bits (98), Expect = 6e-12 Identities = 145/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || || ||| || || || || || || || ||||| |||| ||| | Sbjct 442 GCCAGCTCACCTGGCAAAATGAGCCGTACTGCAGTTTGAATCTCACGCGAT--GATATAG 385 Query 1254408 TTG--CGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 ||| ||||| || | || || ||||| | ||||||| ||||||| |||| | || Sbjct 384 TTGACCGCTTATTGTAATGTGCAAGACGACTTGCCTCGGCTGCGATGCGTTCGAAGACGT 325 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||||||||||||||| | |||||||| ||| || || ||| ||| || || | Sbjct 324 CGTTGACAAACGAGTTCATAATCGACATCGCCTTCGAAGATATTCCCGTGTCTGGATGAA 265 Query 1254526 CCTGCTTGAGCACCTTGTAGATGAACG 1254552 | || || || ||| || ||| ||| Sbjct 264 CTTGTTTCAGGACCCGATAAATGTACG 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106665030261626