Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24]
5,778 sequences; 75,392,092 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq982 100 5e-15
seq4674 96.9 5e-14
seq2330 96.9 5e-14
seq4836 91.5 2e-12
>seq982
Length=21840
Score = 100 bits (110), Expect = 5e-15
Identities = 163/235 (69%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||| || || || || || ||||| || |||||| | |||||||| || |||
Sbjct 11774 TGTACTTGGTTACCGCTTTTGTGCCTTCTGACACCGCGTGCTTTGCCAGTTCACCTGGCA 11833
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
|| || || || || || |||||||| || | || || || |||||
Sbjct 11834 AAATGAGACGTACTGCAGTTTGGATCTCACGCGATGAAATGGTTGACCGTTTGTTGTAAT 11893
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| || || || | ||||||| ||||||| |||| | |||||||||||||| ||||
Sbjct 11894 GTGCAAGACGACTTGCCTCGGCTGCGATGCGCTCGAAGACATCGTTGACAAACGAATTCA 11953
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
| || ||||||| ||| || || ||| ||| || || || || || || ||
Sbjct 11954 TAATTGACATCGCTTTTGAAGATATTCCCGTGTCTGGATGTACTTGTTTCAGGAC 12008
>seq4674
Length=729
Score = 96.9 bits (106), Expect = 5e-14
Identities = 161/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531
|||||||| || || || || || ||||| || |||||| | |||||||| || |||
Sbjct 1 TACTTGGTTACCGCTTTTGTGCCTTCTGACACCGCGTGCTTTGCCAGTTCACCTGGCAAA 60
Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591
|| || || || || || |||||||| || | || || || ||||| |
Sbjct 61 ATGAGACGTACTGCAGTTTGGATCTCACGCGATGAAATGGTTGACCGTTTGTTGTAATGT 120
Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651
|| || || | ||||||| ||||||| |||| | |||||||||||||| |||||
Sbjct 121 GCAAGACGACTTGCCTCGGCTGCGATGCGCTCGAAGACATCGTTGACAAACGAATTCATA 180
Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
|| ||||||| ||| || || ||| ||| || || || || || || ||
Sbjct 181 ATTGACATCGCTTTTGAAGATATTCCCGTGTCTGGATGTACTTGTTTCAGGAC 233
>seq2330
Length=3889
Score = 96.9 bits (106), Expect = 5e-14
Identities = 161/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531
|||||||| || || || || || ||||| || |||||| | |||||||| || |||
Sbjct 1064 TACTTGGTTACCGCTTTTGTGCCTTCTGACACCGCGTGCTTTGCCAGTTCACCTGGCAAA 1123
Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591
|| || || || || || |||||||| || | || || || ||||| |
Sbjct 1124 ATGAGACGTACTGCAGTTTGGATCTCACGCGATGAAATGGTTGACCGTTTGTTGTAATGT 1183
Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651
|| || || | ||||||| ||||||| |||| | |||||||||||||| |||||
Sbjct 1184 GCAAGACGACTTGCCTCGGCTGCGATGCGCTCGAAGACATCGTTGACAAACGAATTCATA 1243
Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
|| ||||||| ||| || || ||| ||| || || || || || || ||
Sbjct 1244 ATTGACATCGCTTTTGAAGATATTCCCGTGTCTGGATGTACTTGTTTCAGGAC 1296
>seq4836
Length=696
Score = 91.5 bits (100), Expect = 2e-12
Identities = 163/236 (69%), Gaps = 4/236 (2%)
Strand=Plus/Minus
Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531
|| ||||| || || || || || || || || |||||| | ||||| || || |||
Sbjct 484 TATTTGGTTACCGCTTTTGTGCCTTCCGATACCGCGTGCTTTGCCAGCTCACCTGGCAAA 425
Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTG--CGCTTGTTAGTGC 1485589
|| || || || || || || ||||| || | ||| |||| ||||| ||
Sbjct 424 ATGAGCCGTACTGCAGTTTGAATCTCACGCGAT--GATATAGTTGACCGCTTATTGTAAT 367
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| || || || | ||||||| ||||||| |||| | ||||||||||||||||||||
Sbjct 366 GTGCAAGACGACTTGCCTCGGCTGCGATGCGTTCGAAGACGTCGTTGACAAACGAGTTCA 307
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACC 1485705
| |||||||||| || || || ||| ||| || || || || || || |||
Sbjct 306 TAATCGACATCGCCTTCGAAGATATTCCCGTGTCTGGATGAACTTGTTTCAGGACC 251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915631767786542
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |