Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq982 100 5e-15 seq4674 96.9 5e-14 seq2330 96.9 5e-14 seq4836 91.5 2e-12 >seq982 Length=21840 Score = 100 bits (110), Expect = 5e-15 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || || || || || ||||| || |||||| | |||||||| || ||| Sbjct 11774 TGTACTTGGTTACCGCTTTTGTGCCTTCTGACACCGCGTGCTTTGCCAGTTCACCTGGCA 11833 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || || || |||||||| || | || || || ||||| Sbjct 11834 AAATGAGACGTACTGCAGTTTGGATCTCACGCGATGAAATGGTTGACCGTTTGTTGTAAT 11893 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || | ||||||| ||||||| |||| | |||||||||||||| |||| Sbjct 11894 GTGCAAGACGACTTGCCTCGGCTGCGATGCGCTCGAAGACATCGTTGACAAACGAATTCA 11953 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 | || ||||||| ||| || || ||| ||| || || || || || || || Sbjct 11954 TAATTGACATCGCTTTTGAAGATATTCCCGTGTCTGGATGTACTTGTTTCAGGAC 12008 >seq4674 Length=729 Score = 96.9 bits (106), Expect = 5e-14 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 |||||||| || || || || || ||||| || |||||| | |||||||| || ||| Sbjct 1 TACTTGGTTACCGCTTTTGTGCCTTCTGACACCGCGTGCTTTGCCAGTTCACCTGGCAAA 60 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 || || || || || || |||||||| || | || || || ||||| | Sbjct 61 ATGAGACGTACTGCAGTTTGGATCTCACGCGATGAAATGGTTGACCGTTTGTTGTAATGT 120 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 || || || | ||||||| ||||||| |||| | |||||||||||||| ||||| Sbjct 121 GCAAGACGACTTGCCTCGGCTGCGATGCGCTCGAAGACATCGTTGACAAACGAATTCATA 180 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 || ||||||| ||| || || ||| ||| || || || || || || || Sbjct 181 ATTGACATCGCTTTTGAAGATATTCCCGTGTCTGGATGTACTTGTTTCAGGAC 233 >seq2330 Length=3889 Score = 96.9 bits (106), Expect = 5e-14 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 |||||||| || || || || || ||||| || |||||| | |||||||| || ||| Sbjct 1064 TACTTGGTTACCGCTTTTGTGCCTTCTGACACCGCGTGCTTTGCCAGTTCACCTGGCAAA 1123 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 || || || || || || |||||||| || | || || || ||||| | Sbjct 1124 ATGAGACGTACTGCAGTTTGGATCTCACGCGATGAAATGGTTGACCGTTTGTTGTAATGT 1183 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 || || || | ||||||| ||||||| |||| | |||||||||||||| ||||| Sbjct 1184 GCAAGACGACTTGCCTCGGCTGCGATGCGCTCGAAGACATCGTTGACAAACGAATTCATA 1243 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 || ||||||| ||| || || ||| ||| || || || || || || || Sbjct 1244 ATTGACATCGCTTTTGAAGATATTCCCGTGTCTGGATGTACTTGTTTCAGGAC 1296 >seq4836 Length=696 Score = 91.5 bits (100), Expect = 2e-12 Identities = 163/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 || ||||| || || || || || || || || |||||| | ||||| || || ||| Sbjct 484 TATTTGGTTACCGCTTTTGTGCCTTCCGATACCGCGTGCTTTGCCAGCTCACCTGGCAAA 425 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTG--CGCTTGTTAGTGC 1485589 || || || || || || || ||||| || | ||| |||| ||||| || Sbjct 424 ATGAGCCGTACTGCAGTTTGAATCTCACGCGAT--GATATAGTTGACCGCTTATTGTAAT 367 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || | ||||||| ||||||| |||| | |||||||||||||||||||| Sbjct 366 GTGCAAGACGACTTGCCTCGGCTGCGATGCGTTCGAAGACGTCGTTGACAAACGAGTTCA 307 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACC 1485705 | |||||||||| || || || ||| ||| || || || || || || ||| Sbjct 306 TAATCGACATCGCCTTCGAAGATATTCCCGTGTCTGGATGAACTTGTTTCAGGACC 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915631767786542