Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24]
5,778 sequences; 75,392,092 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq546 145 6e-30
seq22 136 3e-27
seq59 89.7 4e-13
>seq546
Length=41299
Score = 145 bits (160), Expect = 6e-30
Identities = 120/144 (83%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705
|| ||| | || | |||||||||||| |||||||| || |||||||| || |||||| |
Sbjct 26451 CCTGCAAAAATGAGTCTTTGCTGATCAGGCGGAATGCCTTCTTTGTCCTG-AATTTTAGA 26509
Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765
||| ||| |||| | ||| ||||| ||||||||||||||| || |||||||| |||||
Sbjct 26510 TTTTACATTTTCGATAGTATCAGATGCTTCTACTTCAAGAGTGATTGTTTTGCCGGTTAA 26569
Query 29766 GGTTTTAACAAATATCTGCATTTT 29789
|||||||||||||||||||||||
Sbjct 26570 AGTTTTAACAAATATCTGCATTTT 26593
>seq22
Length=171845
Score = 136 bits (150), Expect = 3e-27
Identities = 162/217 (75%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || ||||||||||| ||||| ||||||||||| || || || | | |||||
Sbjct 88133 ACGGAGAACCAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCAGACAGTGTGCGGCC 88192
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || | || || || ||| | ||||||| ||| ||||| || || || ||||| ||
Sbjct 88193 ATCTTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCTGGTGGGATGCCCTCCTT 88252
Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|| || ||| || | ||||||| |||| | || |||||| ||||| || | ||| |
Sbjct 88253 ATCCTG-AATCTTGGCTTTGACATTTTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGA 88311
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| || |||||||| | ||||| ||||||||||||||
Sbjct 88312 TCGTCTTGCCAGTCAGCGTTTTGACAAATATCTGCAT 88348
Score = 95.1 bits (104), Expect = 9e-15
Identities = 107/141 (76%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705
|| ||| | || | || ||||| ||||||||||| || || |||||||| ||| ||||
Sbjct 88884 CCGGCAAAAATAAGTCGCTGCTGGTCCGGCGGAATTCCTTCCTTGTCTTG-AATCTTTGC 88942
Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765
||| ||| |||| | |||||||||| || ||||| | || || ||||| ||||| |
Sbjct 88943 TTTAACATTTTCGATAGTGTCAGAAGCCTCAACTTCCAAGGTGATCGTTTTACCAGTCAG 89002
Query 29766 GGTTTTAACAAATATCTGCAT 29786
|| || |||||||| |||||
Sbjct 89003 AGTCTTTACAAATATTTGCAT 89023
Score = 86.0 bits (94), Expect = 5e-12
Identities = 105/141 (74%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705
|||||| | || | | |||||||||||| ||||| || || || || || ||| || |
Sbjct 89440 CCAGCAAAGATTAGGCGTTGCTGATCCGGTGGAATGCCTTCCTTATCCTG-AATCTTAGC 89498
Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765
||| ||| | || | || |||||| ||| ||||| | |||||||||||||| || |
Sbjct 89499 TTTTACATTCTCAATGGTATCAGAAGCTTCCACTTCCAACGTTATAGTTTTGCCGGTCAG 89558
Query 29766 GGTTTTAACAAATATCTGCAT 29786
||||| ||||| || |||||
Sbjct 89559 TGTTTTGACAAAGATTTGCAT 89579
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/123 (76%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723
|| || || || |||||||| || ||||| || |||||||| || ||| |||| | ||
Sbjct 88567 TGTTGGTCAGGGGGAATACCTTCCTTGTCCTG-AATTTTTGCCTTCACATTTTCAATTGT 88625
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|| || ||| || || | ||||||||||||||||| || ||||| ||||| |||||
Sbjct 88626 ATCTGATGCTTCAACCTCCAACGTTATAGTTTTGCCAGTCAACGTTTTCACAAAAATCTG 88685
Query 29784 CAT 29786
|||
Sbjct 88686 CAT 88688
>seq59
Length=128137
Score = 89.7 bits (98), Expect = 4e-13
Identities = 108/146 (74%), Gaps = 1/146 (1%)
Strand=Plus/Plus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706
|||||| |||| | | || |||||||| || || || || |||||||| | |||
Sbjct 71872 CCAGCAAATATAAGGCGCTGTTGATCCGGAGGGATGCCTTCCTTGTCTTGGATTTTAGCC 71931
Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766
|| ||| |||| | ||||| || ||| || ||||| || || ||||| ||||| ||
Sbjct 71932 TTAACATTTTCAATTGTGTCTGACGATTCCACCTCAAGTGTAATTGTTTTACCAGTCAAA 71991
Query 29767 GTTTTAACAAATATCTGCAT-TTTAA 29791
||||||||||| || ||||| |||||
Sbjct 71992 GTTTTAACAAAAATTTGCATCTTTAA 72017
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385192073104698
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |