Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq546 145 6e-30 seq22 136 3e-27 seq59 89.7 4e-13 >seq546 Length=41299 Score = 145 bits (160), Expect = 6e-30 Identities = 120/144 (83%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705 || ||| | || | |||||||||||| |||||||| || |||||||| || |||||| | Sbjct 26451 CCTGCAAAAATGAGTCTTTGCTGATCAGGCGGAATGCCTTCTTTGTCCTG-AATTTTAGA 26509 Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765 ||| ||| |||| | ||| ||||| ||||||||||||||| || |||||||| ||||| Sbjct 26510 TTTTACATTTTCGATAGTATCAGATGCTTCTACTTCAAGAGTGATTGTTTTGCCGGTTAA 26569 Query 29766 GGTTTTAACAAATATCTGCATTTT 29789 ||||||||||||||||||||||| Sbjct 26570 AGTTTTAACAAATATCTGCATTTT 26593 >seq22 Length=171845 Score = 136 bits (150), Expect = 3e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||||||||| ||||| ||||||||||| || || || | | ||||| Sbjct 88133 ACGGAGAACCAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCAGACAGTGTGCGGCC 88192 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || || ||| | ||||||| ||| ||||| || || || ||||| || Sbjct 88193 ATCTTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCTGGTGGGATGCCCTCCTT 88252 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || ||| || | ||||||| |||| | || |||||| ||||| || | ||| | Sbjct 88253 ATCCTG-AATCTTGGCTTTGACATTTTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGA 88311 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || |||||||| | ||||| |||||||||||||| Sbjct 88312 TCGTCTTGCCAGTCAGCGTTTTGACAAATATCTGCAT 88348 Score = 95.1 bits (104), Expect = 9e-15 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705 || ||| | || | || ||||| ||||||||||| || || |||||||| ||| |||| Sbjct 88884 CCGGCAAAAATAAGTCGCTGCTGGTCCGGCGGAATTCCTTCCTTGTCTTG-AATCTTTGC 88942 Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765 ||| ||| |||| | |||||||||| || ||||| | || || ||||| ||||| | Sbjct 88943 TTTAACATTTTCGATAGTGTCAGAAGCCTCAACTTCCAAGGTGATCGTTTTACCAGTCAG 89002 Query 29766 GGTTTTAACAAATATCTGCAT 29786 || || |||||||| ||||| Sbjct 89003 AGTCTTTACAAATATTTGCAT 89023 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705 |||||| | || | | |||||||||||| ||||| || || || || || ||| || | Sbjct 89440 CCAGCAAAGATTAGGCGTTGCTGATCCGGTGGAATGCCTTCCTTATCCTG-AATCTTAGC 89498 Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765 ||| ||| | || | || |||||| ||| ||||| | |||||||||||||| || | Sbjct 89499 TTTTACATTCTCAATGGTATCAGAAGCTTCCACTTCCAACGTTATAGTTTTGCCGGTCAG 89558 Query 29766 GGTTTTAACAAATATCTGCAT 29786 ||||| ||||| || ||||| Sbjct 89559 TGTTTTGACAAAGATTTGCAT 89579 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723 || || || || |||||||| || ||||| || |||||||| || ||| |||| | || Sbjct 88567 TGTTGGTCAGGGGGAATACCTTCCTTGTCCTG-AATTTTTGCCTTCACATTTTCAATTGT 88625 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 || || ||| || || | ||||||||||||||||| || ||||| ||||| ||||| Sbjct 88626 ATCTGATGCTTCAACCTCCAACGTTATAGTTTTGCCAGTCAACGTTTTCACAAAAATCTG 88685 Query 29784 CAT 29786 ||| Sbjct 88686 CAT 88688 >seq59 Length=128137 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/146 (74%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 |||||| |||| | | || |||||||| || || || || |||||||| | ||| Sbjct 71872 CCAGCAAATATAAGGCGCTGTTGATCCGGAGGGATGCCTTCCTTGTCTTGGATTTTAGCC 71931 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || ||| |||| | ||||| || ||| || ||||| || || ||||| ||||| || Sbjct 71932 TTAACATTTTCAATTGTGTCTGACGATTCCACCTCAAGTGTAATTGTTTTACCAGTCAAA 71991 Query 29767 GTTTTAACAAATATCTGCAT-TTTAA 29791 ||||||||||| || ||||| ||||| Sbjct 71992 GTTTTAACAAAAATTTGCATCTTTAA 72017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385192073104698