Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq867 289 2e-72 seq283 233 1e-55 seq642 125 5e-23 seq14 87.8 1e-11 >seq867 Length=25794 Score = 289 bits (320), Expect = 2e-72 Identities = 432/607 (71%), Gaps = 12/607 (2%) Strand=Plus/Minus Query 282279 CATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTAT 282338 |||| | || || || | |||||| || || ||||| || || | | || |||| Sbjct 14300 CATGCATACCTCCTCCAAGATCAAATATGAGAACATTTTGATCATTTTTTAATTTCTTAT 14241 Query 282339 CAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGAC 282398 |||| ||||| || || || || || ||||| ||||||||||||| ||| || | | | Sbjct 14240 CAAGGCCATATGCTAATGCTGCTGCTGTTGGCTCATTAATAATTCGCAAGACGTCTAATC 14181 Query 282399 CAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAA 282458 |||| || |||| || |||||||| ||||||| || ||| ||||||||||| || | Sbjct 14180 CAGCGATAATTCCAGCGTCTTTAGTCGCTTGTCGCTGACTATCATTAAAATATGCTGGTA 14121 Query 282459 CAGTAATAACGGCATCTGTTACT-TCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATT 282517 | || ||||| || | |||| | | |||| | || | ||||||| ||||||| Sbjct 14120 CTGTGATAACTGCTTTACTTACAGTAAATCCCAAAAAAATTTCA-GCTGTTTCTTTCATT 14062 Query 282518 TTACTTAAAATCATTGATGAAATTTGTTCTGGAG--AATATTGCTTGGATTCATTTTGAT 282575 ||||| |||||||| |||||||||| |||||||| ||| || ||| |||||| | | Sbjct 14061 TTACTCAAAATCATAGATGAAATTTCTTCTGGAGTAAATGTTCGTTG--TTCATTCTTAA 14004 Query 282576 ATGATACTTCAAAATATGGTTTATTACCAACATTA---ATAACTTTAAATGGCCAATATT 282632 || |||||| | |||||| ||| ||| || |||||||||||||| | Sbjct 14003 ATTCTACTTCGATTGCTGGTTTG---CCATTTTTAGAAATTACTTTAAATGGCCATAAAC 13947 Query 282633 TCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAA 282692 ||||||| |||||| || | || || || | || || || ||||||||| || Sbjct 13946 GCATATCTTCTTGAACTTTTGGATCGTTTAACTTTCGTCCTATCAATCGTTTTATTGAAA 13887 Query 282693 AAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTT 282752 |||| ||||| ||||||| || |||||| | |||| ||| ||||| | | ||| Sbjct 13886 AAATTGTATTTTCTGGATTACGAGCTACTTGATCATATGCTGAATCACCAATTAAACGTT 13827 Query 282753 CTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAA 282812 | | || ||||||| |||||||||||| || || || ||||| ||||| || || | Sbjct 13826 CACTTTCCGTAAATGCAACATATGATGGCGTAGTTTTGTTGCCTTGGTCATTAGCTATTA 13767 Query 282813 TTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATAC 282872 |||| ||| ||||| ||| | ||||| ||||||||| | || || ||||| ||||| | Sbjct 13766 TTTCTACTCGACCATATTGATAAACACCAACACAACTATACGTAGTACCTAAGTCAATTC 13707 Query 282873 CAATAGC 282879 |||| || Sbjct 13706 CAATTGC 13700 Score = 136 bits (150), Expect = 3e-26 Identities = 190/264 (72%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 281580 TAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGAT-TTTTTACAAGGAATT 281638 ||||| | | |||||||| |||| | || ||||| | | | ||| |||||||| |||||| Sbjct 15904 TAACTCCTGGTTGATTATTTGAAAATGTAGTAAACATTTTTGATGTTTTTACA-GGAATT 15846 Query 281639 GTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAA 281698 || |||| ||||| | | | ||||| | |||||||| ||||| | ||| | |||| Sbjct 15845 CGAGTATTTCGTTCAATTAAAGTAGTCATCACTCCACCAGCAGTTTCAATACCTAAAGAA 15786 Query 281699 AGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGA 281758 || || || ||||||||||| | | | || | ||| ||||| | || ||| Sbjct 15785 AGTGGTGTCACATCAACTAGCAACACGTCTTTCACATTTGCATCACGTACGTCAGTGAGA 15726 Query 281759 ATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTT 281818 ||||||||||||| || || ||||| || || || ||||||||||| | || | ||| Sbjct 15725 ATAGCTGCTTGAACTGCTGCGCCATAAGCTACTGCCTCATCAGGATTTATAGAATGATTA 15666 Query 281819 AGTTTTTTACCATTGAAAAAATTT 281842 || | |||||| | | ||||||| Sbjct 15665 AGCTCTTTACCTATAAGAAAATTT 15642 Score = 89.7 bits (98), Expect = 4e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 86178 || ||||| | |||||||| ||||| |||||||| ||| | || ||||| || || Sbjct 14235 CCATATGCTAATGCTGCTGCTGTTGGCTCATTAATAATTCGCAAGACGTCTAATCCAGCG 14176 Query 86179 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 86238 || | ||| || ||| ||||||| ||| |||||||||||||||||||| || Sbjct 14175 ATAATTCCAGCGTCTTTAGTCGCTTGTCGCTGACTATCATTAAAATATGCTGGTACTGTG 14116 Query 86239 ATAACTGCTTTA 86250 |||||||||||| Sbjct 14115 ATAACTGCTTTA 14104 >seq283 Length=65264 Score = 233 bits (258), Expect = 1e-55 Identities = 515/767 (67%), Gaps = 10/767 (1%) Strand=Plus/Minus Query 281341 CATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTT 281400 ||| ||||| |||| ||| | || | || || || ||| ||||| ||||| || || Sbjct 46450 CATCCTCTCGATTTCATCCTTCGACAGCCTGCCCTTATCATTCGTAATGGTAATCTTGTT 46391 Query 281401 GGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATC 281460 |||| |||||||| || |||| ||||| || ||||| || ||||| | ||| Sbjct 46390 CTGTTTGCCAGTTGATTTGTCTTGAGCAGATACATTCAGGATACCGTTCGCATCAATATC 46331 Query 281461 AAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAA 281520 ||| || ||||||||||||||||| |||| ||||||||||||| || ||| | || Sbjct 46330 AAACGTTACTTCAATTTGAGGGACACCTCGGGGAGCAGGTGGGATTCCAGACAACTCGAA 46271 Query 281521 TGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGT 281580 | | || || |||||| |||||||| | | ||| ||||| || ||| || || Sbjct 46270 TTTACCAAGCAGATTATTGTCTTTAGTCATTGCTCGCTCACCTTCATAAACCTGAATCAA 46211 Query 281581 AACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGT 281640 || ||| || || || ||||| || || || | ||| ||||| || || || Sbjct 46210 CACACCAGGCTGGTTGTCGGAATACGTAGTGAAGGTTTGGGACGTTTTAGTTGGGATGGT 46151 Query 281641 TGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAG 281700 || || | | ||| | ||||| | ||| ||||| ||||| | || | || || Sbjct 46150 AGTATTACGCTTAATGAGGGCAGTCATTACACCGCCAGCAGTTTCAATTCCCAAGGAGAG 46091 Query 281701 AGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAAT 281760 ||||| |||||| | || | || || || | |||| | | ||| | ||| Sbjct 46090 AGGAGCGACATCTAGAAGTAGAAGATCCTGCACAGCTTCAGACTTATCTCCAGATAAAAT 46031 Query 281761 AGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAG 281820 |||||| |||| | || |||||||||||||||||||| ||||||| | | | ||| | Sbjct 46030 AGCTGCCTGAACTGATGCCCCATATGCAACAGCTTCATCGGGATTAATACTCTTATTCAA 45971 Query 281821 TTTTTTACCATTGAAAAAATTTGAAAG-AAGTTGTCTTACCTTAGGAATACGAGATGATC 281879 | ||| ||| |||||| | ||||| || || | || ||||||||||||| || | Sbjct 45970 CTCTTTGCCAGAGAAAAAGTCGGAAAGTAACTTCT-GCACTTTAGGAATACGAGTAGAGC 45912 Query 281880 CTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTT 281939 | ||||||| ||||| || ||||| || | ||||||| ||||| ||| ||| ||| Sbjct 45911 CACCAACTAGAACAATGTCGTGCACTTGAGCCTTATCCATTTTTGCATCACGCAAAGCTT 45852 Query 281940 TTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTC 281999 |||| || || || | | | ||||| |||| || || ||||| || || | Sbjct 45851 TTTCTACTGGATCCATTGTTGAGCGGAACAAATCTGCGCAGAGCTCTTCAAAACGGGCAC 45792 Query 282000 TAGTAAGA---GTGACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTA 282055 ||||| | ||| || || || || || ||||||| ||||| | || || | Sbjct 45791 GAGTAATACTTGTG----TAGAAGTCGATACCCTCGAACAGTGAATCGATCTCGATACTT 45736 Query 282056 GTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGT 282102 | ||| | ||| || | | ||||| || | ||||||||| || Sbjct 45735 GCTTGTGACGAGCTGGACAACGTCCGTTTTGCTCTTTCACATGCAGT 45689 Score = 93.3 bits (102), Expect = 3e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 |||||||| | |||||| |||| || || || || |||||||||||||| | ||| || Sbjct 45290 TTTTTATCTAAACCATAGGCAATTGCTGCTGCTGTAGGTTCATTAATAATACGCAACACG 45231 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||| ||||| |||| ||| || || || || | || ||||| |||||||| Sbjct 45230 TTCAGACCCGCAATGGCACCTGAATCCTTTGTTGCCTGACGCTGGGAATCATTAAAATAA 45171 Query 282452 GCAGGAACAGTAATAACGGCATCT 282475 ||||| || || | || || ||| Sbjct 45170 GCAGGGACTGTGACTACAGCGTCT 45147 >seq642 Length=34890 Score = 125 bits (138), Expect = 5e-23 Identities = 162/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || |||||||| |||| ||||||||| || |||||||| || |||| || ||| Sbjct 16388 TTTTTGTCTAGACCATATGCAATAGCAGCAGCCGTGGGTTCATTGATTATTCGCACGACA 16447 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| || ||||| || |||||||| || || || | ||| | ||| || || || Sbjct 16448 TTAAGGCCTGCAATAGAACCCGCATCTTTGGTAGCCTGACGTTGCGCATCATTGAAGTAA 16507 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT--GCTGTTT 282509 || || || || | | |||| | ||||||||||| | ||| || || || | | Sbjct 16508 GCGGGCACTGTCACGATAGCATGCTTAACTTCTTTTCCCAAATA--CGATTCAGCAATAT 16565 Query 282510 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAG 282551 ||||||||| | | || ||| | |||||||| |||||||| Sbjct 16566 TCTTCATTTTAGTAAGAACCATAGCTGAAATTTCTTCTGGAG 16607 Score = 93.3 bits (102), Expect = 3e-13 Identities = 169/245 (69%), Gaps = 12/245 (5%) Strand=Plus/Plus Query 282614 ACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 282673 || ||||| ||||||| | | |||||| ||||| || | || | |||| ||| Sbjct 16732 ACCTTAAAAGGCCAATGTCTAATATCTTGCTGAACTTTTGGATCCGAGTATTCTCGACCG 16791 Query 282674 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCT---TGATATTTG 282730 || || ||||| |||| || | ||||| |||||| | || | |||| || Sbjct 16792 ATCAAACGTTTAACATCGAAGACTGTATTTTCTGGATTG---GTAGTTAACTGATTCTTT 16848 Query 282731 GCTGCATCTCCAATCAGATGTTC-----TGTCTCTG-TAAATGAAACATATGATGGAGTT 282784 |||||||| ||||||||| |||| | || || | |||| |||||||||||| || Sbjct 16849 GCTGCATCACCAATCAGACGTTCACCACTTTCGCTCATGAATGCAACATATGATGGTGTA 16908 Query 282785 GTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACA 282844 | | ||||| || ||||| || |||||||| ||| ||||||| | || || ||| Sbjct 16909 ATTCTGTTACCCTGTTCATTAGCTATAATTTCCACTCGTCCATTTTTATAAACGCCGACA 16968 Query 282845 CAACT 282849 ||||| Sbjct 16969 CAACT 16973 >seq14 Length=197575 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 432287 AGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACG 432346 ||| || ||||| ||||| |||||||||||||||||||| || || ||| | || || || Sbjct 69556 AGGAAAGGAAGGCCGTATCAGAGGAAATTTGATGGGAAAACGAGTAGATTTTTCAGCTCG 69497 Query 432347 TACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTAT 432406 || || ||||| | ||||| ||| | | | || ||| ||||| || | | ||| Sbjct 69496 AACTGTAATTACACCAGATCCAAATTTACCCATAGATACAGTCGGTGTACCGCGTACTAT 69437 Query 432407 TGCGAAAAATCTTACTTTTGACGAAATTGTAAC 432439 ||| ||||| | || ||| |||||||| || Sbjct 69436 TGCTCAAAATATGACATTTCCAGAAATTGTCAC 69404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740346724617828