Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24]
5,778 sequences; 75,392,092 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq22 192 1e-43
seq546 120 6e-22
seq59 91.5 3e-13
>seq22
Length=171845
Score = 192 bits (212), Expect = 1e-43
Identities = 172/216 (80%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| ||||| || || || || || ||||| || ||||| || ||||| || | | ||
Sbjct 88133 ACGGAGAACCAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCAGACAGTGTGCGGCC 88192
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
||||| | || ||||| ||||| || | || |||||||||||| || || || |||||
Sbjct 88193 ATCTTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCTGGTGGGATGCCCTCCTT 88252
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||| |||||||| ||||| |||||||||||||||||| || ||||| |||||||| ||
Sbjct 88253 ATCCTGAATCTTGGCTTTGACATTTTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGAT 88312
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||||||| |||| ||| || ||||||||||||||
Sbjct 88313 CGTCTTGCCAGTCAGCGTTTTGACAAATATCTGCAT 88348
Score = 140 bits (154), Expect = 6e-28
Identities = 115/140 (82%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||||||||| | ||| ||||| || || || ||||||||||| |||||||| |||
Sbjct 89440 CCAGCAAAGATTAGGCGTTGCTGATCCGGTGGAATGCCTTCCTTATCCTGAATCTTAGCT 89499
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||| ||||| |||||| || ||| |||||||| ||||| || ||||| ||||
Sbjct 89500 TTTACATTCTCAATGGTATCAGAAGCTTCCACTTCCAACGTTATAGTTTTGCCGGTCAGT 89559
Query 82791 GTCTTTACAAATATCTGCAT 82810
|| || ||||| || |||||
Sbjct 89560 GTTTTGACAAAGATTTGCAT 89579
Score = 127 bits (140), Expect = 4e-24
Identities = 112/140 (80%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|| ||||| || |||| || || || || || ||||||||||| |||||||||||||||
Sbjct 88884 CCGGCAAAAATAAGTCGCTGCTGGTCCGGCGGAATTCCTTCCTTGTCTTGAATCTTTGCT 88943
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| |||||||| || || ||| || || |||||||| || ||||| || || ||||
Sbjct 88944 TTAACATTTTCGATAGTGTCAGAAGCCTCAACTTCCAAGGTGATCGTTTTACCAGTCAGA 89003
Query 82791 GTCTTTACAAATATCTGCAT 82810
|||||||||||||| |||||
Sbjct 89004 GTCTTTACAAATATTTGCAT 89023
Score = 113 bits (124), Expect = 9e-20
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|| ||||| || || | ||||| || || || || |||||||| || ||||| |||||
Sbjct 88549 CCCGCAAAAATAAGACGCTGTTGGTCAGGGGGAATACCTTCCTTGTCCTGAATTTTTGCC 88608
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| ||||||||||| ||||| | ||| || ||||| ||||| || ||||| ||||||
Sbjct 88609 TTCACATTTTCAATTGTATCTGATGCTTCAACCTCCAACGTTATAGTTTTGCCAGTCAAC 88668
Query 82791 GTCTTTACAAATATCTGCAT 82810
|| || ||||| ||||||||
Sbjct 88669 GTTTTCACAAAAATCTGCAT 88688
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| ||||| | || ||||| || || || |||||||||||||| || || ||
Sbjct 89794 CCAGCAAAAATTAGGCGCTGCTGATCAGGTGGAATACCTTCCTTATCTTGGATTTTGGCC 89853
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| |||||||| || || || || ||| || || | || || ||||| || ||||
Sbjct 89854 TTCACATTTTCGATAGTGTCGGAAGCTTCAACCTCGAGGGTGATAGTCTTACCAGTCAGT 89913
Query 82791 GTCTTTACAAATATCTGCAT 82810
|| || || || || |||||
Sbjct 89914 GTTTTCACGAAAATTTGCAT 89933
>seq546
Length=41299
Score = 120 bits (132), Expect = 6e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|| ||||| || |||||||| ||||| || || || ||||| || || ||||| || | |
Sbjct 26451 CCTGCAAAAATGAGTCTTTGCTGATCAGGCGGAATGCCTTCTTTGTCCTGAATTTTAGAT 26510
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
||||||||||| || |||||| | ||||||||| | ||| || || ||||| || ||
Sbjct 26511 TTTACATTTTCGATAGTATCAGATGCTTCTACTTCAAGAGTGATTGTTTTGCCGGTTAAA 26570
Query 82791 GTCTTTACAAATATCTGCATT 82811
|| || |||||||||||||||
Sbjct 26571 GTTTTAACAAATATCTGCATT 26591
>seq59
Length=128137
Score = 91.5 bits (100), Expect = 3e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | |||||||| ||||| || |||||||| ||||| || || ||
Sbjct 71872 CCAGCAAATATAAGGCGCTGTTGATCCGGAGGGATGCCTTCCTTGTCTTGGATTTTAGCC 71931
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| ||||||||||| || || | ||| || || | || || || || || |||||
Sbjct 71932 TTAACATTTTCAATTGTGTCTGACGATTCCACCTCAAGTGTAATTGTTTTACCAGTCAAA 71991
Query 82791 GTCTTTACAAATATCTGCAT 82810
|| || ||||| || |||||
Sbjct 71992 GTTTTAACAAAAATTTGCAT 72011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981754514718742
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |