Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4836 100 4e-15 seq4674 91.5 2e-12 seq2330 91.5 2e-12 seq982 91.5 2e-12 >seq4836 Length=696 Score = 100 bits (110), Expect = 4e-15 Identities = 130/178 (73%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | |||||||| ||||||||||||||||||||| | |||| ||||||| ||||| Sbjct 291 AAGGCGATGTCGATTATGAACTCGTTTGTCAACGACGTCTTCGAACGCATCGCAGCCGAG 350 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCG--CAACACGATCGGCACGCGCGAGATCCAGA 725082 || |||| || || | | ||| ||||| |||| ||| |||| ||||| || | Sbjct 351 GCAAGTCGTCTTGCACATTACAATAAGCGGTCAACTATATC--ATCGCGTGAGATTCAAA 408 Query 725083 CCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | || || || || || ||| || || ||||| | |||||| || || || ||||| Sbjct 409 CTGCAGTACGGCTCATTTTGCCAGGTGAGCTGGCAAAGCACGCGGTATCGGAAGGCAC 466 >seq4674 Length=729 Score = 91.5 bits (100), Expect = 2e-12 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| || ||||| |||||||||||||| | |||| ||||||| ||||||| || Sbjct 188 ATGTCAATTATGAATTCGTTTGTCAACGATGTCTTCGAGCGCATCGCAGCCGAGGCAAGT 129 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | | |||||| || || || |||| |||||||| || || || Sbjct 128 CGTCTTGCACATTACAACAAACGGTCAACCATTTCATCGCGTGAGATCCAAACTGCAGTA 69 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || || ||| || |||||||| | |||||| || || || ||||| Sbjct 68 CGTCTCATTTTGCCAGGTGAACTGGCAAAGCACGCGGTGTCAGAAGGCAC 19 >seq2330 Length=3889 Score = 91.5 bits (100), Expect = 2e-12 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| || ||||| |||||||||||||| | |||| ||||||| ||||||| || Sbjct 1251 ATGTCAATTATGAATTCGTTTGTCAACGATGTCTTCGAGCGCATCGCAGCCGAGGCAAGT 1192 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | | |||||| || || || |||| |||||||| || || || Sbjct 1191 CGTCTTGCACATTACAACAAACGGTCAACCATTTCATCGCGTGAGATCCAAACTGCAGTA 1132 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || || ||| || |||||||| | |||||| || || || ||||| Sbjct 1131 CGTCTCATTTTGCCAGGTGAACTGGCAAAGCACGCGGTGTCAGAAGGCAC 1082 >seq982 Length=21840 Score = 91.5 bits (100), Expect = 2e-12 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| || ||||| |||||||||||||| | |||| ||||||| ||||||| || Sbjct 11963 ATGTCAATTATGAATTCGTTTGTCAACGATGTCTTCGAGCGCATCGCAGCCGAGGCAAGT 11904 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | | |||||| || || || |||| |||||||| || || || Sbjct 11903 CGTCTTGCACATTACAACAAACGGTCAACCATTTCATCGCGTGAGATCCAAACTGCAGTA 11844 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || || ||| || |||||||| | |||||| || || || ||||| Sbjct 11843 CGTCTCATTTTGCCAGGTGAACTGGCAAAGCACGCGGTGTCAGAAGGCAC 11794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177253901280036