Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq885 116 3e-21 seq222 84.2 2e-11 >seq885 Length=25167 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 19615 GTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAAT 19674 || ||||| || || || || |||||| | | || | || |||||| | || |||||| Sbjct 22232 GTGCATGATACAGTGGTAAACCAACTCTTAGCTAAGATGGATGGTGTTGAACAGCTGAAT 22173 Query 19675 AATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGA 19734 || ||| | |||||||| |||||||||||| ||| | || || || || |||||| Sbjct 22172 AACATTCTTGTTATTGGAATGACTAATAGAAAGGATATGATTGATGAGGCGTTGTTACGA 22113 Query 19735 CCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAA 19794 || ||||| ||||| | |||| |||||| |||| |||||| | || ||| || | Sbjct 22112 CCAGGTCGTATGGAAGTGCAGATGGAAATTTCACTACCAGATGAAAGCGGTCGTTTGCAG 22053 Query 19795 ATTTTAAACATACATACATCAACCATGCG 19823 |||||||| || || || || | ||||| Sbjct 22052 ATTTTAAAGATTCACACTTCTAGAATGCG 22024 >seq222 Length=74321 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 43897 GGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCA 43956 ||| | ||| ||| | |||||||| ||| |||||||||| || | ||| || || ||||| Sbjct 46452 GGTAAATCGCTTTTCTCAAGAAGTCCAAGTACCAGAAGCTCGGTTTTTCTACGGTTTTCA 46393 Query 43957 AATTGCCATAGAAAATATTCATTCGGAAATGTAC 43990 |||| | |||||||||||||| ||||||||| Sbjct 46392 AATTATGGTGGAAAATATTCATTCAGAAATGTAC 46359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397428011396890