Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq22 125 8e-24 seq59 104 3e-17 seq546 100 3e-16 >seq22 Length=171845 Score = 125 bits (138), Expect = 8e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || ||| | || ||||| ||||| || | |||||||| || Sbjct 88688 ATGCAGATTTTTGTGAAAACGTTGACTGGCAAAACTATAACGTTGGAGGTTGAAGCATCA 88629 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| ||||||| ||||||||||||||||| || ||||| || ||||| Sbjct 88628 GATACAATTGAAAATGTGAAGGCAAAAATTCAGGACAAGGAAGGTATTCCCCCTGACCAA 88569 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 |||||||| |||||||| |||| Sbjct 88568 CAGCGTCTTATTTTTGCGGGTA 88547 Score = 114 bits (126), Expect = 1e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||||||||| || || |||||||| ||||| || | || || || | | Sbjct 89579 ATGCAAATCTTTGTCAAAACACTGACCGGCAAAACTATAACGTTGGAAGTGGAAGCTTCT 89520 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | || ||||| |||||||| ||||| || ||||| || || ||| Sbjct 89519 GATACCATTGAGAATGTAAAAGCTAAGATTCAGGATAAGGAAGGCATTCCACCGGATCAG 89460 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 || || ||||| ||||||||| Sbjct 89459 CAACGCCTAATCTTTGCTGGT 89439 Score = 105 bits (116), Expect = 8e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || || || || || |||||||| || || |||||||| | Sbjct 89933 ATGCAAATTTTCGTGAAAACACTGACTGGTAAGACTATCACCCTCGAGGTTGAAGCTTCC 89874 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| ||||||| ||||| || || ||||| || ||||| || || ||| Sbjct 89873 GACACTATCGAAAATGTGAAGGCCAAAATCCAAGATAAGGAAGGTATTCCACCTGATCAG 89814 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 ||||| ||||||||||||||| Sbjct 89813 CAGCGCCTAATTTTTGCTGGT 89793 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| || || || || || || || | || |||||| | | Sbjct 89023 ATGCAAATATTTGTAAAGACTCTGACTGGTAAAACGATCACCTTGGAAGTTGAGGCTTCT 88964 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | || || || ||||| |||||||| |||||||| || |||||| Sbjct 88963 GACACTATCGAAAATGTTAAAGCAAAGATTCAAGACAAGGAAGGAATTCCGCCGGACCAG 88904 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| || |||||||| |||| Sbjct 88903 CAGCGACTTATTTTTGCCGGTA 88882 >seq59 Length=128137 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || | || || || || ||||| |||||||| || || Sbjct 72011 ATGCAAATTTTTGTTAAAACTTTGACTGGTAAAACAATTACACTTGAGGTGGAATCGTCA 71952 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | ||||||||||| || |||||||| || || ||||| || || Sbjct 71951 GACACAATTGAAAATGTTAAGGCTAAAATCCAAGACAAGGAAGGCATCCCTCCGGATCAA 71892 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| || || |||||||||| Sbjct 71891 CAGCGCCTTATATTTGCTGGTA 71870 >seq546 Length=41299 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || | |||||||| || || |||||||| || || || Sbjct 26591 AATGCAGATATTTGTTAAAACTTTAACCGGCAAAACAATCACTCTTGAAGTAGAAGCATC 26532 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | |||| | || |||||||||||||||| || || ||||| || || || Sbjct 26531 TGATACTATCGAAAATGTAAAATCTAAAATTCAGGACAAAGAAGGCATTCCGCCTGATCA 26472 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| | || |||||||| |||| Sbjct 26471 GCAAAGACTCATTTTTGCAGGTA 26449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570269209331360