Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24]
5,778 sequences; 75,392,092 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq22 125 8e-24
seq59 104 3e-17
seq546 100 3e-16
>seq22
Length=171845
Score = 125 bits (138), Expect = 8e-24
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || ||||| || ||| | || ||||| ||||| || | |||||||| ||
Sbjct 88688 ATGCAGATTTTTGTGAAAACGTTGACTGGCAAAACTATAACGTTGGAGGTTGAAGCATCA 88629
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| |||| ||||||| ||||||||||||||||| || ||||| || |||||
Sbjct 88628 GATACAATTGAAAATGTGAAGGCAAAAATTCAGGACAAGGAAGGTATTCCCCCTGACCAA 88569
Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547
|||||||| |||||||| ||||
Sbjct 88568 CAGCGTCTTATTTTTGCGGGTA 88547
Score = 114 bits (126), Expect = 1e-20
Identities = 110/141 (78%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||||||||| || || |||||||| ||||| || | || || || | |
Sbjct 89579 ATGCAAATCTTTGTCAAAACACTGACCGGCAAAACTATAACGTTGGAAGTGGAAGCTTCT 89520
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| | || ||||| |||||||| ||||| || ||||| || || |||
Sbjct 89519 GATACCATTGAGAATGTAAAAGCTAAGATTCAGGATAAGGAAGGCATTCCACCGGATCAG 89460
Query 27526 CAGCGTCTAATTTTTGCTGGT 27546
|| || ||||| |||||||||
Sbjct 89459 CAACGCCTAATCTTTGCTGGT 89439
Score = 105 bits (116), Expect = 8e-18
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || || || || || || || |||||||| || || |||||||| |
Sbjct 89933 ATGCAAATTTTCGTGAAAACACTGACTGGTAAGACTATCACCCTCGAGGTTGAAGCTTCC 89874
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | |||| ||||||| ||||| || || ||||| || ||||| || || |||
Sbjct 89873 GACACTATCGAAAATGTGAAGGCCAAAATCCAAGATAAGGAAGGTATTCCACCTGATCAG 89814
Query 27526 CAGCGTCTAATTTTTGCTGGT 27546
||||| |||||||||||||||
Sbjct 89813 CAGCGCCTAATTTTTGCTGGT 89793
Score = 104 bits (114), Expect = 3e-17
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| ||||| ||||| || || || || || || || | || |||||| | |
Sbjct 89023 ATGCAAATATTTGTAAAGACTCTGACTGGTAAAACGATCACCTTGGAAGTTGAGGCTTCT 88964
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | |||| | || || || ||||| |||||||| |||||||| || ||||||
Sbjct 88963 GACACTATCGAAAATGTTAAAGCAAAGATTCAAGACAAGGAAGGAATTCCGCCGGACCAG 88904
Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547
||||| || |||||||| ||||
Sbjct 88903 CAGCGACTTATTTTTGCCGGTA 88882
>seq59
Length=128137
Score = 104 bits (114), Expect = 3e-17
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| ||||| || || | || || || || ||||| |||||||| || ||
Sbjct 72011 ATGCAAATTTTTGTTAAAACTTTGACTGGTAAAACAATTACACTTGAGGTGGAATCGTCA 71952
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| |||| | ||||||||||| || |||||||| || || ||||| || ||
Sbjct 71951 GACACAATTGAAAATGTTAAGGCTAAAATCCAAGACAAGGAAGGCATCCCTCCGGATCAA 71892
Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547
||||| || || ||||||||||
Sbjct 71891 CAGCGCCTTATATTTGCTGGTA 71870
>seq546
Length=41299
Score = 100 bits (110), Expect = 3e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || ||||| || || | |||||||| || || |||||||| || || ||
Sbjct 26591 AATGCAGATATTTGTTAAAACTTTAACCGGCAAAACAATCACTCTTGAAGTAGAAGCATC 26532
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| || | |||| | || |||||||||||||||| || || ||||| || || ||
Sbjct 26531 TGATACTATCGAAAATGTAAAATCTAAAATTCAGGACAAAGAAGGCATTCCGCCTGATCA 26472
Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547
||| | || |||||||| ||||
Sbjct 26471 GCAAAGACTCATTTTTGCAGGTA 26449
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570269209331360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |