Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq22 89.7 3e-13 >seq22 Length=171845 Score = 89.7 bits (98), Expect = 3e-13 Identities = 110/145 (76%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 34565 TACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTT 34624 |||| ||||| || | |||||||||||| || || | || |||||||| ||| |||| Sbjct 88547 TACCCGCAAAAATAAGACGCTGTTGGTCAGGGGGAATACCTTCCTTGTCC-TGAATTTTT 88605 Query 34625 GTTTTAACGATAA-AATTGTGTCTTC-GCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || || | |||||| ||| ||| || || |||| ||||| ||||| || || Sbjct 88606 GCCTTCACATTTTCAATTGTATCTGATGCT-TCAACCTCCAACGTTATAGTTTTGCCAGT 88664 Query 34683 TAACGTTTTCACAAAAATCTGCATG 34707 |||||||||||||||||||||||| Sbjct 88665 CAACGTTTTCACAAAAATCTGCATG 88689 Score = 84.2 bits (92), Expect = 1e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 34565 TACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTT 34624 |||||||||| || | ||||| ||||||||||| | ||| ||||||||| ||| ||| Sbjct 88882 TACCGGCAAAAATAAGTCGCTGCTGGTCCGGCGGAATTCCTTCCTTGTCT-TGAATCTTT 88940 Query 34625 GTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTT 34683 | |||||| | || ||||| ||| ||||||| ||| ||||||||||| || Sbjct 88941 GCTTTAACATTTTCGATAGTGTCAGAAGCCTCAACTTCCAAGGTGATCGTTTTACCAGTC 89000 Query 34684 AACGTTTTCACAAAAATCTGCAT 34706 | || || ||||| || ||||| Sbjct 89001 AGAGTCTTTACAAATATTTGCAT 89023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314707436938274