Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq22 143 2e-29 seq59 100 2e-16 seq546 98.7 9e-16 >seq22 Length=171845 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||||||||| ||||| ||||| |||||| | || ||| | || || || | || Sbjct 88349 CATGCAGATATTTGTCAAAACGCTGACTGGCAAGACGATCACTTTGGAGGTAGAGGCTTC 88290 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || ||||||| | |||||| || ||||| || || || ||||| ||||| ||||| Sbjct 88289 TGATACGATTGAAAATGTCAAAGCCAAGATTCAGGATAAGGAGGGCATCCCACCAGATCA 88230 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| || || || | ||||| || || |||||||| | || | || || ||||| Sbjct 88229 ACAACGATTGATTTTTGCCGGAAAGCAGTTGGAAGATGGCCGCACACTGTCTGACTACAA 88170 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||||||| ||||| || | ||||||||| | ||| | || |||||| Sbjct 88169 TATTCAAAAAGAGTCCACACTTCATTTGGTTCTCCGTCTTCGTGGTGGC 88121 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| ||||||||||| |||| || | ||||||||| | || Sbjct 89579 ATGCAAATCTTTGTCAAAACACTGACCGGCAAAACTATAACGTTGGAAGTGGAAGCTTCT 89520 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| || ||||| || || |||||||| ||||| ||||| Sbjct 89519 GATACCATTGAGAATGTAAAAGCTAAGATTCAGGATAAGGAAGGCATTCCACCGGATCAG 89460 Query 27108 CAGCGTTTAAT 27118 || || |||| Sbjct 89459 CAACGCCTAAT 89449 >seq59 Length=128137 Score = 100 bits (110), Expect = 2e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||| |||| || || | ||||| ||||| |||||| |||| Sbjct 72011 ATGCAAATTTTTGTTAAAACTTTGACTGGTAAAACAATTACACTTGAGGTGGAATCGTCA 71952 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||||| |||||||| |||||||| || || |||||| Sbjct 71951 GACACAATTGAAAATGTTAAGGCTAAAATCCAAGACAAGGAAGGCATCCCTCCGGATCAA 71892 Query 27108 CAGCGTTTAATAT 27120 ||||| | |||| Sbjct 71891 CAGCGCCTTATAT 71879 >seq546 Length=41299 Score = 98.7 bits (108), Expect = 9e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| |||||| | |||||||| | || ||||||||||| ||| | || Sbjct 26590 ATGCAGATATTTGTTAAAACTTTAACCGGCAAAACAATCACTCTTGAAGTAGAAGCATCT 26531 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| |||||||| |||||||||||||| || || ||||| Sbjct 26530 GATACTATCGAAAATGTAAAATCTAAAATTCAGGACAAAGAAGGCATTCCGCCTGATCAG 26471 Query 27108 CA 27109 || Sbjct 26470 CA 26469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434886988018560