Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq22 134 3e-26 >seq22 Length=171845 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||||| |||||||||||||| || || || || | || || Sbjct 88127 ACGAAGACGGAGAACCAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCAGACAGTGT 88186 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| |||||| || || || || | |||||||| || || || | || Sbjct 88187 GCGGCCATCTTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCTGGTGGGATGCC 88246 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| ||||| ||||| ||| || ||||| || || ||||| || ||||| | Sbjct 88247 CTCCTTATCCTGAATCTTGGCTTTGACATTTTCAATCGTATCAGAAGCCTCTACCTCCAA 88306 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||||||| || || || || || ||||| | |||||| Sbjct 88307 AGTGATCGTCTTGCCAGTCAGCGTTTTGACAAATATCTGCAT 88348 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || || ||||| || || ||||| || |||| |||||||||||| || |||||| | Sbjct 88884 CCGGCAAAAATAAGTCGCTGCTGGTCCGGCGGAATTCCTTCCTTGTCTTGAATCTTTGCT 88943 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || |||||||| |||||||| ||||| || | |||||||| || || || ||| Sbjct 88944 TTAACATTTTCGATAGTGTCAGAAGCCTCAACTTCCAAGGTGATCGTTTTACCAGTCAGA 89003 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||||||||| | ||||| Sbjct 89004 GTCTTTACAAATATTTGCAT 89023 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || || || ||||| || || ||||| |||| |||||||| || ||||| || Sbjct 89794 CCAGCAAAAATTAGGCGCTGCTGATCAGGTGGAATACCTTCCTTATCTTGGATTTTGGCC 89853 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||||| |||||||| ||||| || |||||||||||| ||||| ||||| || || || Sbjct 89854 TTCACATTTTCGATAGTGTCGGAAGCTTCAACCTCGAGGGTGATAGTCTTACCAGTCAGT 89913 Query 211095 GTCTTTACAAACACCTGCAT 211114 || || || || | ||||| Sbjct 89914 GTTTTCACGAAAATTTGCAT 89933 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || || ||||| || ||||||||||| |||| |||||||||||||| || ||| Sbjct 88549 CCCGCAAAAATAAGACGCTGTTGGTCAGGGGGAATACCTTCCTTGTCCTGAATTTTTGCC 88608 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||||| ||||| || || || || ||||||||| | || || || || || || | Sbjct 88609 TTCACATTTTCAATTGTATCTGATGCTTCAACCTCCAACGTTATAGTTTTGCCAGTCAAC 88668 Query 211095 GTCTTTACAAACACCTGCAT 211114 || || ||||| | |||||| Sbjct 88669 GTTTTCACAAAAATCTGCAT 88688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159066187252970