Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24]
5,778 sequences; 75,392,092 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq22 104 2e-17
seq546 82.4 5e-11
>seq22
Length=171845
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || ||||| || || || || ||||||||| | || || || | |
Sbjct 88348 ATGCAGATATTTGTCAAAACGCTGACTGGCAAGACGATCACTTTGGAGGTAGAGGCTTCT 88289
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || |||||| | ||| || ||| || || || || | || |||||||||
Sbjct 88288 GATACGATTGAAAATGTCAAAGCCAAGATTCAGGATAAGGAGGGCATCCCACCAGATCAA 88229
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| || || || |||||||| || || ||||||| | ||||| | || |||||
Sbjct 88228 CAACGATTGATTTTTGCCGGAAAGCAGTTGGAAGATGGCCGCACACTGTCTGACTACAAT 88169
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| ||||||||||||||| | ||||| |||
Sbjct 88168 ATTCAAAAAGAGTCCACACTTCATTTGGTT 88139
>seq546
Length=41299
Score = 82.4 bits (90), Expect = 5e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
||||||||||| || |||||||| | || || ||||| |||||||| ||||| || |
Sbjct 26593 AAAATGCAGATATTTGTTAAAACTTTAACCGGCAAAACAATCACTCTTGAAGTAGAAGCA 26534
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| || ||| | |||| ||||| |||||| ||||||||||| | ||||| |||
Sbjct 26533 TCTGATACTATCGAAAATGTAAAATCTAAAATTCAGGACAAAGAAGGCATTCCGCCTGAT 26474
Query 23728 CAACAGCGTTTAATATTTGCCGG 23750
|| || | | || ||||| ||
Sbjct 26473 CAGCAAAGACTCATTTTTGCAGG 26451
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337985797575224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |