Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24]
5,778 sequences; 75,392,092 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq22 161 2e-34
seq546 109 1e-18
>seq22
Length=171845
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| || || || |||| ||| | ||| |||||||| || ||||||||||
Sbjct 88122 CCACCACGAAGACGGAGAACCAAATGAAGTGTGGACTCTTTTTGAATATTGTAGTCAGAC 88181
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| ||||||||||| || | || || |||||||| ||||| |||||||| || ||
Sbjct 88182 AGTGTGCGGCCATCTTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCTGGTGGG 88241
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| |||||||| || || ||||| ||||| || | || || || || ||||| || ||
Sbjct 88242 ATGCCCTCCTTATCCTGAATCTTGGCTTTGACATTTTCAATCGTATCAGAAGCCTCTACC 88301
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | |||||||||||| || |||| || || || |||||||||||
Sbjct 88302 TCCAAAGTGATCGTCTTGCCAGTCAGCGTTTTGACAAATATCTGCAT 88348
Score = 127 bits (140), Expect = 4e-24
Identities = 112/140 (80%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|||||||| || | || || ||||| |||||| || ||||||||||| |||||||||
Sbjct 88884 CCGGCAAAAATAAGTCGCTGCTGGTCCGGCGGAATTCCTTCCTTGTCTTGAATCTTTGCT 88943
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| || | ||||||||||| ||||| || ||||| | |||||||| ||||| |||| |
Sbjct 88944 TTAACATTTTCGATAGTGTCAGAAGCCTCAACTTCCAAGGTGATCGTTTTACCAGTCAGA 89003
Query 283080 GTCTTAACGAATATCTGCAT 283099
||||| || ||||| |||||
Sbjct 89004 GTCTTTACAAATATTTGCAT 89023
Score = 109 bits (120), Expect = 1e-18
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| ||||| || | || || || ||| |||||||| ||||| |||||||| || ||
Sbjct 89794 CCAGCAAAAATTAGGCGCTGCTGATCAGGTGGAATACCTTCCTTATCTTGGATTTTGGCC 89853
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| || | ||||||||||| |||||||| || ||||| ||||| |||||||| ||||
Sbjct 89854 TTCACATTTTCGATAGTGTCGGAAGCTTCAACCTCGAGGGTGATAGTCTTACCAGTCAGT 89913
Query 283080 GTCTTAACGAATATCTGCAT 283099
|| || ||||| || |||||
Sbjct 89914 GTTTTCACGAAAATTTGCAT 89933
>seq546
Length=41299
Score = 109 bits (120), Expect = 1e-18
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| ||||| || | | ||| || ||| |||||| || || ||||| || || || | |
Sbjct 26451 CCTGCAAAAATGAGTCTTTGCTGATCAGGCGGAATGCCTTCTTTGTCCTGAATTTTAGAT 26510
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
||||| | |||||||| || || ||||| ||||| |||||||| || || || || |||
Sbjct 26511 TTTACATTTTCGATAGTATCAGATGCTTCTACTTCAAGAGTGATTGTTTTGCCGGTTAAA 26570
Query 283080 GTCTTAACGAATATCTGCATTTT 283102
|| ||||| ||||||||||||||
Sbjct 26571 GTTTTAACAAATATCTGCATTTT 26593
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046661709242812
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |