Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24]
5,778 sequences; 75,392,092 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq22 116 9e-21
seq59 95.1 3e-14
seq546 86.0 2e-11
>seq22
Length=171845
Score = 116 bits (128), Expect = 9e-21
Identities = 108/137 (79%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || || || ||||| || || |||||||||||| | || || || || |||
Sbjct 89020 CAAATATTTGTAAAGACTCTGACTGGTAAAACGATCACCTTGGAAGTTGAGGCTTCTGAC 88961
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || ||| ||||||||| ||||| |||||||| || |||||||||||
Sbjct 88960 ACTATCGAAAATGTTAAAGCAAAGATTCAAGACAAGGAAGGAATTCCGCCGGACCAGCAG 88901
Query 178044 CGACTTATCTTCGCCGG 178060
|||||||| || |||||
Sbjct 88900 CGACTTATTTTTGCCGG 88884
Score = 113 bits (124), Expect = 1e-19
Identities = 149/207 (72%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || ||||| || || || || |||||||| | ||||| || || ||
Sbjct 88345 CAGATATTTGTCAAAACGCTGACTGGCAAGACGATCACTTTGGAGGTAGAGGCTTCTGAT 88286
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || |||||| ||||||||||| || || || ||||| || || || |||
Sbjct 88285 ACGATTGAAAATGTCAAAGCCAAGATTCAGGATAAGGAGGGCATCCCACCAGATCAACAA 88226
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | || || |||||||| ||| | |||||||| | || || | || || || |
Sbjct 88225 CGATTGATTTTTGCCGGAAAGCAGTTGGAAGATGGCCGCACACTGTCTGACTACAATATT 88166
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
|||||||| || ||||| ||| | |||
Sbjct 88165 CAAAAAGAGTCCACACTTCATTTGGTT 88139
Score = 95.1 bits (104), Expect = 3e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || || ||||| || || || ||||| || || | || |||||| || ||
Sbjct 89576 CAAATCTTTGTCAAAACACTGACCGGCAAAACTATAACGTTGGAAGTGGAAGCTTCTGAT 89517
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||| || ||| ||||||||||| || ||||| || || ||||| ||||||
Sbjct 89516 ACCATTGAGAATGTAAAAGCTAAGATTCAGGATAAGGAAGGCATTCCACCGGATCAGCAA 89457
Query 178044 CGACTTATCTTCGCCGG 178060
|| || ||||| || ||
Sbjct 89456 CGCCTAATCTTTGCTGG 89440
Score = 89.7 bits (98), Expect = 1e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||||||||| || || || || || |||||||||||||| ||| || |||
Sbjct 89930 CAAATTTTCGTGAAAACACTGACTGGTAAGACTATCACCCTCGAGGTTGAAGCTTCCGAC 89871
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || || || || || || || ||||| || || || || |||||
Sbjct 89870 ACTATCGAAAATGTGAAGGCCAAAATCCAAGATAAGGAAGGTATTCCACCTGATCAGCAG 89811
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || || || ||
Sbjct 89810 CGCCTAATTTTTGCTGG 89794
>seq59
Length=128137
Score = 95.1 bits (104), Expect = 3e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || |||||| | || || ||||| || || || ||||||||| ||||||
Sbjct 72008 CAAATTTTTGTTAAAACTTTGACTGGTAAAACAATTACACTTGAGGTGGAATCGTCAGAC 71949
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || || || || ||||| ||||| ||||||||||| || ||
Sbjct 71948 ACAATTGAAAATGTTAAGGCTAAAATCCAAGACAAGGAAGGCATCCCTCCGGATCAACAG 71889
Query 178044 CGACTTATCTTCGCCGG 178060
|| ||||| || || ||
Sbjct 71888 CGCCTTATATTTGCTGG 71872
>seq546
Length=41299
Score = 86.0 bits (94), Expect = 2e-11
Identities = 107/146 (73%), Gaps = 3/146 (2%)
Strand=Plus/Minus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | || || || |||||| | || || ||||| ||||| || || || |||
Sbjct 26593 AAAATGC---AGATATTTGTTAAAACTTTAACCGGCAAAACAATCACTCTTGAAGTAGAA 26537
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
|| || || ||||| || || ||| || ||||||||||||||||| || || ||
Sbjct 26536 GCATCTGATACTATCGAAAATGTAAAATCTAAAATTCAGGACAAAGAAGGCATTCCGCCT 26477
Query 178035 GACCAGCAACGACTTATCTTCGCCGG 178060
|| |||||| |||| || || || ||
Sbjct 26476 GATCAGCAAAGACTCATTTTTGCAGG 26451
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203642087026932
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |