Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thelazia_20callipaeda_20[genbank_20GCA_5F000981425.1_202014-09-24] 5,778 sequences; 75,392,092 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq22 116 9e-21 seq59 95.1 3e-14 seq546 86.0 2e-11 >seq22 Length=171845 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||||| || || |||||||||||| | || || || || ||| Sbjct 89020 CAAATATTTGTAAAGACTCTGACTGGTAAAACGATCACCTTGGAAGTTGAGGCTTCTGAC 88961 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| ||||||||| ||||| |||||||| || ||||||||||| Sbjct 88960 ACTATCGAAAATGTTAAAGCAAAGATTCAAGACAAGGAAGGAATTCCGCCGGACCAGCAG 88901 Query 178044 CGACTTATCTTCGCCGG 178060 |||||||| || ||||| Sbjct 88900 CGACTTATTTTTGCCGG 88884 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| || || || || |||||||| | ||||| || || || Sbjct 88345 CAGATATTTGTCAAAACGCTGACTGGCAAGACGATCACTTTGGAGGTAGAGGCTTCTGAT 88286 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| ||||||||||| || || || ||||| || || || ||| Sbjct 88285 ACGATTGAAAATGTCAAAGCCAAGATTCAGGATAAGGAGGGCATCCCACCAGATCAACAA 88226 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || || |||||||| ||| | |||||||| | || || | || || || | Sbjct 88225 CGATTGATTTTTGCCGGAAAGCAGTTGGAAGATGGCCGCACACTGTCTGACTACAATATT 88166 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 |||||||| || ||||| ||| | ||| Sbjct 88165 CAAAAAGAGTCCACACTTCATTTGGTT 88139 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| || || || ||||| || || | || |||||| || || Sbjct 89576 CAAATCTTTGTCAAAACACTGACCGGCAAAACTATAACGTTGGAAGTGGAAGCTTCTGAT 89517 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || ||| ||||||||||| || ||||| || || ||||| |||||| Sbjct 89516 ACCATTGAGAATGTAAAAGCTAAGATTCAGGATAAGGAAGGCATTCCACCGGATCAGCAA 89457 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||| || || Sbjct 89456 CGCCTAATCTTTGCTGG 89440 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||| || || || || || |||||||||||||| ||| || ||| Sbjct 89930 CAAATTTTCGTGAAAACACTGACTGGTAAGACTATCACCCTCGAGGTTGAAGCTTCCGAC 89871 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || || || || || || ||||| || || || || ||||| Sbjct 89870 ACTATCGAAAATGTGAAGGCCAAAATCCAAGATAAGGAAGGTATTCCACCTGATCAGCAG 89811 Query 178044 CGACTTATCTTCGCCGG 178060 || || || || || || Sbjct 89810 CGCCTAATTTTTGCTGG 89794 >seq59 Length=128137 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||| | || || ||||| || || || ||||||||| |||||| Sbjct 72008 CAAATTTTTGTTAAAACTTTGACTGGTAAAACAATTACACTTGAGGTGGAATCGTCAGAC 71949 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || || || ||||| ||||| ||||||||||| || || Sbjct 71948 ACAATTGAAAATGTTAAGGCTAAAATCCAAGACAAGGAAGGCATCCCTCCGGATCAACAG 71889 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| || || || Sbjct 71888 CGCCTTATATTTGCTGG 71872 >seq546 Length=41299 Score = 86.0 bits (94), Expect = 2e-11 Identities = 107/146 (73%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || || |||||| | || || ||||| ||||| || || || ||| Sbjct 26593 AAAATGC---AGATATTTGTTAAAACTTTAACCGGCAAAACAATCACTCTTGAAGTAGAA 26537 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || ||||| || || ||| || ||||||||||||||||| || || || Sbjct 26536 GCATCTGATACTATCGAAAATGTAAAATCTAAAATTCAGGACAAAGAAGGCATTCCGCCT 26477 Query 178035 GACCAGCAACGACTTATCTTCGCCGG 178060 || |||||| |||| || || || || Sbjct 26476 GATCAGCAAAGACTCATTTTTGCAGG 26451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203642087026932