Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq334 118 1e-21 seq8483 87.8 2e-12 seq2815 87.8 2e-12 seq914 84.2 2e-11 >seq334 Length=798041 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||||| || ||||| || ||||| | || || ||||| || Sbjct 402231 ATGCAAATCTTCGTTAAGACGCTTACCGGCAAGACGATCACGCTGGAAGTGGAAGCATCC 402172 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | || | || |||| || || ||||||||||| | |||||| Sbjct 402171 GATACTATCGAGAATGTGAAAGCGAAGATTCAGGATAAGGAGGGCATCCCACCAGACCAG 402112 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||| || | ||||||||||||||| || || | || || || ||||||||| Sbjct 402111 CAGCGACTTATTTTCGCGGGCAAACAGCTTGAGGATGGACGTACTCTGTCGGACTACAAC 402052 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||| || ||| | || || ||||| ||| Sbjct 402051 ATCCAAAAAGAGTCTACCCTTCATCTTGTG 402022 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| || ||||| |||| || || || | Sbjct 407943 ATGCAAATCTTCGTGAAGACTCTCACTGGCAAGACGATCACTCTCGAAGTGGAGGCATCG 407884 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || ||||| |||||| || |||| ||||| ||||||||||| | ||||| Sbjct 407883 GATACGATTGAAAACG-TCAAGGCTAAGATTCAAGACAAGGAGGGCATCCCACCTGACCA 407825 Query 40809 GCAACGACTCATCTACGCGGGCAAACA 40835 || || ||||||| || ||||| || Sbjct 407824 ACAGCGTCTCATCTTTGCAGGCAAGCA 407798 >seq8483 Length=232 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || ||||| ||||| | || ||||||||| || Sbjct 142 ATGCAGATTTTCGTGAAGACCCTCACTGGTAAAACGATCACACTTGAAGTCGAAGCCTCC 83 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| |||||| || |||| ||||| ||||| || || | |||||| Sbjct 82 GATACTATCGAAAATGTCAAGGCGAAGATTCAAGACAAGGAGGGGATACCACCCGACCAG 23 Query 40810 CAACGACTCAT 40820 ||||||||||| Sbjct 22 CAACGACTCAT 12 >seq2815 Length=71442 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || ||||| ||||| | || ||||||||| || Sbjct 58499 ATGCAGATTTTCGTGAAGACCCTCACTGGTAAAACGATCACACTTGAAGTCGAAGCCTCC 58558 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| |||||| || |||| ||||| ||||| || || | |||||| Sbjct 58559 GATACTATCGAAAATGTCAAGGCGAAGATTCAAGACAAGGAGGGGATACCACCCGACCAG 58618 Query 40810 CAACGACTCAT 40820 ||||||||||| Sbjct 58619 CAACGACTCAT 58629 >seq914 Length=351905 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| || |||||||| |||||||| ||| | | |||||| | | ||||||||| ||||| Sbjct 97170 GGTGGATCGTTTCGCGCAGGAGGTACAGATTCCTGAGGCGAGATTCTTCTACGGTTTTCA 97111 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 ||| || || ||| | || || ||||||||||||| | ||||| ||||| Sbjct 97110 GATTATGATCGAAAACATTCATTCAGAAATGTATTCGAAGATGATCGAAACGTA 97057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515071995434320