Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq334 107 2e-18 seq1429 93.3 4e-14 seq2815 91.5 1e-13 seq333 91.5 1e-13 seq1879 82.4 7e-11 >seq334 Length=798041 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||||||||| |||||||| || || ||| || |||||| |||||||| || Sbjct 402035 GTAGACTCTTTTTGGATGTTGTAGTCCGACAGAGTACGTCCATCCTCAAGCTGTTTGCCC 402094 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || || |||||||| || || || ||||||||||| || ||| || ||| Sbjct 402095 GCGAAAATAAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTATCCTGAATCTTCGCTTTC 402154 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | |||| || || | |||| || || || | || | ||| |||||||| || || Sbjct 402155 ACATTCTCGATAGTATCGGATGCT-TCCACTTCCAGCGTGATCGTCTTGCCGGTAAGCGT 402213 Query 118721 TTTTACAAAAATCTGCAT 118738 || || || || ||||| Sbjct 402214 CTTAACGAAGATTTGCAT 402231 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||| || ||| ||||||||||||||||||| || || ||||| |||||||| ||||| Sbjct 402827 TTTACCTGCGAAGATGAGACGCTGCTGATCTGGCGGGATGCCTTCCTTGTCCTGGATTTT 402886 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||||| | || | |||||| | ||| || |||| || | || |||||||| Sbjct 402887 AGCCTTAACGTTCTCAATGGTGTCGGACGCCTCCACTTCGAGAGTGATAGTCTTGCCGGT 402946 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || |||||||| Sbjct 402947 CAACGTTTTCACGAAGATCTGCAT 402970 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTTT 118654 || |||||| | ||||||||||||||||| || || || |||||||||| |||| ||||| Sbjct 405842 TTACCAGCGAAAATGAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCCTGT-ATTTT 405900 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||||| | |||| ||||||| ||| || || | || | ||||| || || Sbjct 405901 CGCCTTAACGTTCTCGATTGTGTCCGAAGCCTCCACTTCAAGTGTGATGGTTTTACCAGT 405960 Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739 || || || || |||||||||||| Sbjct 405961 CAACGTCTTAACGAAAATCTGCATG 405985 >seq1429 Length=437943 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 || ||| | || |||||||| |||||||| || || ||||||||||| |||||| Sbjct 418749 CCGGCGAAAATTAGACGCTGTTGATCGGGTGGGATACCCTCCTTGTCCTGAATTTTGGCC 418690 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | ||||| || |||| ||| ||||| | || | || ||||| |||||| Sbjct 418689 TTTACGTTTTCGATAGTATCCGACGCCTCAACCTCAAGTGTGATGGTCTTGCCCGTCAGA 418630 Query 118719 GTTTTTACAAAAATCTGCATG 118739 || || ||||||||||||||| Sbjct 418629 GTCTTCACAAAAATCTGCATG 418609 >seq2815 Length=71442 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 ||||||| || ||||||||||| ||||| || |||||||| ||| || ||| || | Sbjct 59719 AGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTTTTGACGT 59660 Query 118666 GTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 ||||| |||||||| |||||| || | || | |||||| ||||| || || || | Sbjct 59659 TTTCGATGGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGTGTCTTCA 59600 Query 118726 CAAAAATCTGCAT 118738 | || |||||||| Sbjct 59599 CGAATATCTGCAT 59587 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 118608 ATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGT 118667 || ||||| ||||||||||| ||||| || || |||||| ||| || ||| || | | Sbjct 59281 ATAAGACGTTGCTGATCGGGTGGTATTCCTTCTTTGTCTTGAATCTTCGCTTTGACATTT 59222 Query 118668 TCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727 |||| ||||||| |||||| || | || | |||||| ||||| || || || || Sbjct 59221 TCGATCGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGTGTCTTCACG 59162 Query 118728 AAAATCTGCAT 118738 || |||||||| Sbjct 59161 AATATCTGCAT 59151 >seq333 Length=310902 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || ||| |||| |||||||||||||| || || ||||||||||||||| || || Sbjct 40204 TTACCGGCGAAGATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTGTCTTGGATCTTG 40145 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||| || | |||| |||||| | ||| || || || | || | ||| || || || Sbjct 40144 GTTTTCACGTTCTCGATGGTGTCTGACGCT-TCCACTTCAAGAGTGATCGTCTTTCCTGT 40086 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || |||||||| ||||||||||| Sbjct 40085 TAGTGTTTTTACGAAAATCTGCAT 40062 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 ||||||| || ||||||||||| ||||| || |||||||| ||| || ||| || | Sbjct 44583 AGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTTTTGACGT 44524 Query 118666 GTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 ||||| |||||||| |||||| || | || | |||||| ||||| || || || | Sbjct 44523 TTTCGATGGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGTGTCTTCA 44464 Query 118726 CAAAAATCTGCAT 118738 | || |||||||| Sbjct 44463 CGAATATCTGCAT 44451 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || ||| | |||||||||||||| ||||| || || |||||||||||| ||| || Sbjct 45045 TTACCGGCGAAAATGAGACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCTTGAATCTTC 44986 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | ||||| || || | |||||| || | || | ||| |||||||| Sbjct 44985 GCCTTCACGTTTTCGATTGTATCTGACGCCTCGACTTCCAACGTTATCGTCTTGCCGGTG 44926 Query 118716 AGAGTTTTTACAAAAATCTGCATG 118739 || || || ||||| ||||||||| Sbjct 44925 AGTGTCTTGACAAAGATCTGCATG 44902 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 ||||||| || ||||||||||| ||||| || |||||||| ||| || ||| || | Sbjct 43323 AGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTTTTGACGT 43264 Query 118666 GTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 ||||| ||| |||| |||||| || | || | |||||| ||||| || || || | Sbjct 43263 TTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGTGTCTTCA 43204 Query 118726 CAAAAATCTGCAT 118738 | || |||||||| Sbjct 43203 CGAATATCTGCAT 43191 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 ||||||| || ||||||||||| ||||| || |||||||| ||| || ||| || | Sbjct 43575 AGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTTTTGACGT 43516 Query 118666 GTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 ||||| ||| |||| |||||| || | || | |||||| ||||| || || || | Sbjct 43515 TTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGTGTCTTCA 43456 Query 118726 CAAAAATCTGCAT 118738 | || |||||||| Sbjct 43455 CGAATATCTGCAT 43443 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 ||||||| || ||||||||||| ||||| || |||||||| ||| || ||| || | Sbjct 43827 AGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTTTTGACGT 43768 Query 118666 GTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 ||||| ||| |||| |||||| || | || | |||||| ||||| || || || | Sbjct 43767 TTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGTGTCTTCA 43708 Query 118726 CAAAAATCTGCAT 118738 | || |||||||| Sbjct 43707 CGAATATCTGCAT 43695 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 ||||||| || ||||||||||| ||||| || |||||||| ||| || ||| || | Sbjct 44079 AGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTTTTGACGT 44020 Query 118666 GTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 ||||| ||| |||| |||||| || | || | |||||| ||||| || || || | Sbjct 44019 TTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGTGTCTTCA 43960 Query 118726 CAAAAATCTGCAT 118738 | || |||||||| Sbjct 43959 CGAATATCTGCAT 43947 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 ||||||| || ||||||||||| ||||| || |||||||| ||| || ||| || | Sbjct 44331 AGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTTTTGACGT 44272 Query 118666 GTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 ||||| ||| |||| |||||| || | || | |||||| ||||| || || || | Sbjct 44271 TTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGTGTCTTCA 44212 Query 118726 CAAAAATCTGCAT 118738 | || |||||||| Sbjct 44211 CGAATATCTGCAT 44199 >seq1879 Length=657420 Score = 82.4 bits (90), Expect = 7e-11 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC-TGTAATTTTTTGTTTAACC 118664 |||| | || ||||| |||||||| |||||||| ||||| |||| |||| || || Sbjct 526482 AGATCAAGCGTTGCTGGTCGGGAGGAATGCCCTCTTTGTCCTGTA-TTTTAGCCTTCACA 526540 Query 118665 TGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 118724 | ||| | || |||| | ||| ||||||| ||| | ||| || || || || ||||| Sbjct 526541 TTTTCAATCGTATCCGAGGCCTCCACCTCGAGGGTTATCGTCTTACCCGTTAGGGTTTTG 526600 Query 118725 ACAAAAATCTGCAT 118738 || ||||||||||| Sbjct 526601 ACGAAAATCTGCAT 526614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433709548001044