Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq334 111 2e-19 seq233 98.7 1e-15 seq2830 96.9 4e-15 seq3105 95.1 1e-14 seq2202 95.1 1e-14 seq3568 93.3 5e-14 seq2612 93.3 5e-14 seq1683 93.3 5e-14 seq3124 84.2 3e-11 >seq334 Length=798041 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| ||||| || ||||| || | |||||| || | || || ||||| || || ||||| Sbjct 402040 CTCTTTTTGGATGTTGTAGTCCGACAGAGTACGTCCATCCTCAAGCTGTTTGCCCGCGAA 402099 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || |||||||||||||| | || | || |||||| ||| ||| | || | ||| | Sbjct 402100 AATAAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTATCC-TGAATCTTCGCTTTCACAT 402158 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 || | | || ||| | |||||| || | |||||| || ||||| || |||||||| | Sbjct 402159 TCTCGATAGTATCGGATGCTTCCACTTCCAGCGTGATCGTCTTGCCGGTAAGCGTCTTAA 402218 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 402219 CGAAGATTTGCAT 402231 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 43043 ACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG 43102 ||||||||| || || ||||| ||||| | || | || |||||||||| ||| ||| Sbjct 403541 ACCAGCGAAGATCAGCCGCTGTTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTTGC 403600 Query 43103 TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 43162 || | || | | |||||| | ||||| |||| |||||||||||| ||||| || Sbjct 403601 CTTAACGTTCTCGATCGTGTCAGAAGCCTCCACCTCGAGCGTGATGGTTTTACCCGTAAG 403660 Query 43163 CGTCTTTACAAAGATTTGCAT 43183 ||||| || ||||| ||||| Sbjct 403661 AGTCTTCACGAAGATCTGCAT 403681 >seq233 Length=652816 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 651578 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 651519 Query 60126 TACTACCGAGGATT 60139 |||||||||||||| Sbjct 651518 TACTACCGAGGATT 651505 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| || | ||||||||| ||||| | ||||||||||| ||||||||||||| Sbjct 652622 CTCCCCGGCCGGCATTCGAACCCTTGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 652563 Query 60126 TACTACCGAGGATT 60139 |||||||||||||| Sbjct 652562 TACTACCGAGGATT 652549 >seq2830 Length=637951 Score = 96.9 bits (106), Expect = 4e-15 Identities = 78/93 (84%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | |||| |||| ||||||||||||| |||||| | ||||||||||| ||||| Sbjct 209120 AAAAACTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACT 209061 Query 60118 CACCACTATACTACCGAGGA-TTGAATATATAA 60149 |||||||||||||||||||| || ||| || || Sbjct 209060 CACCACTATACTACCGAGGACTTCAATGTACAA 209028 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 150755 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 150814 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 150815 TACTACCGAGGA 150826 >seq3105 Length=1056644 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 657665 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 657606 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 657605 TACTACCGAGGA 657594 >seq2202 Length=155475 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 7358 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 7299 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 7298 TACTACCGAGGA 7287 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 8585 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 8526 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 8525 TACTACCGAGGA 8514 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 12153 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 12094 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 12093 TACTACCGAGGA 12082 >seq3568 Length=233 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| |||||||||| || |||||| | ||||||||||| ||||||||||||| Sbjct 52 CTCCCCGGCGGGGAATCGAAACCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 111 Query 60126 TACTACCGAGGATT 60139 |||||||||||||| Sbjct 112 TACTACCGAGGATT 125 >seq2612 Length=248643 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 248246 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 248305 Query 60126 TACTACCGAGGATT 60139 |||| ||||||||| Sbjct 248306 TACTCCCGAGGATT 248319 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| |||||||||| || Sbjct 246728 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCAGTA 246787 Query 60126 TACTACCGAGGATT 60139 ||||||||||| || Sbjct 246788 TACTACCGAGGGTT 246801 Score = 87.8 bits (96), Expect = 2e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 247090 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGATGATACTCACCACTA 247149 Query 60126 TACTACCG 60133 |||||||| Sbjct 247150 TACTACCG 247157 >seq1683 Length=790 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||| | ||||||||||| ||||||||||||| Sbjct 198 CTCCCCGGCCGGGAATCGAACCCGGGTCTGGCACGTGACAGGCGCGGATACTCACCACTA 257 Query 60126 TACTACCGAGGATT 60139 |||||||||||||| Sbjct 258 TACTACCGAGGATT 271 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||| || ||||||||||||| Sbjct 560 CTCCCCGGCGGGGAATCGAACCCGGGTCTCGCACGTGACATACGCGGATACTCACCACTA 619 Query 60126 TACTACCGAGGATT 60139 ||| |||||||||| Sbjct 620 TACCACCGAGGATT 633 >seq3124 Length=211503 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| |||||| |||||| |||||| | | ||||||||| ||||||||||||| Sbjct 13769 CTCCCCGGCCGGGAATGGAACCCCGGTCTCGCACATGACAGGCGCGGATACTCACCACTA 13828 Query 60126 TACTACCGAGGATT 60139 ||| |||||||||| Sbjct 13829 TACCACCGAGGATT 13842 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| |||||| |||||| |||||| | | ||||||||| ||||||||||||| Sbjct 14871 CTCCCCGGCCGGGAATGGAACCCCGGTCTCGCACATGACAGGCGCGGATACTCACCACTA 14812 Query 60126 TACTACCGAGGATT 60139 ||| |||||||||| Sbjct 14811 TACCACCGAGGATT 14798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571654224563960