Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq334 111 1e-19 seq333 91.5 1e-13 >seq334 Length=798041 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||| || || | ||| ||||| || ||||||||||| ||| Sbjct 402005 CCCCCGCGAAGACGAAGCACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCCGAC 402064 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||| ||||| |||||||| || ||||||||||| || Sbjct 402065 AGAGTACGTCCATCCTCAAGCTGTTTGCCCGCGAAAATAAGTCGCTGCTGGTCTGGTGGG 402124 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||| || ||| || ||||| | || | || | ||||| | ||| || Sbjct 402125 ATGCCCTCCTTATCCTGAATC-TTCGCTTTCACATTCTCGATAGTATCGGATGCTTCCAC 402183 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||| || |||||||| || || || || ||||| ||||| Sbjct 402184 TTCCAGCGTGATCGTCTTGCCGGTAAGCGTCTTAACGAAGATTTGCAT 402231 >seq333 Length=310902 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 34240 CAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGC 34299 |||| ||| || ||||||||||| |||||||||||| || | | ||||||||| Sbjct 45052 CAACCTCTTACCGGCGAAAATGAGACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCTTG 44993 Query 34300 TATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTT 34359 ||||| ||| | | | || | ||| | || ||||| |||| ||| || || || Sbjct 44992 AATCTTCGCCTTCACGTTTTCGATTGTATCTGACGCCTCGACTTCCAACGTTATCGTCTT 44933 Query 34360 GCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||||| || || |||||||||||||| Sbjct 44932 GCCGGTGAGTGTCTTGACAAAGATCTGCAT 44903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322982001933920