Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq334 122 8e-23 seq2815 118 9e-22 seq1429 93.3 4e-14 seq333 91.5 1e-13 seq914 89.7 5e-13 seq8483 82.4 7e-11 >seq334 Length=798041 Score = 122 bits (134), Expect = 8e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || ||||| |||||||| | || || ||| | ||| Sbjct 402231 ATGCAAATCTTCGTTAAGACGCTTACCGGCAAGACGATCACGCTGGAAGTGGAAGCATCC 402172 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | || ||| || || ||| ||||| ||| | || || |||||| Sbjct 402171 GATACTATCGAGAATGTGAAAGCGAAGATTCAGGATAAGGAGGGCATCCCACCAGACCAG 402112 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||||| || || ||||| ||||||||| | || || | | | ||| || || || || Sbjct 402111 CAGCGACTTATTTTCGCGGGCAAACAGCTTGAGGA-TGGACGTACTCTGTCGGACTACAA 402053 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| |||||||| || || |||||||| || ||| Sbjct 402052 CATCCAAAAAGAGTCTACCCTTCATCTTGTGCTT 402019 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || |||| ||||| || ||||| |||| || || ||||| Sbjct 402970 ATGCAGATCTTCGTGAAAACGTTGACCGGCAAGACTATCACTCTCGAAGTGGAGGCGTCC 402911 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | ||| ||||||||||||| | ||||| || ||| Sbjct 402910 GACACCATTGAGAACGTTAAGGCTAAAATCCAGGACAAGGAAGGCATCCCGCCAGATCAG 402851 Query 31313 CAGCGTCTAATATTCGCTGGCAAA 31336 |||||||| || ||||| || ||| Sbjct 402850 CAGCGTCTCATCTTCGCAGGTAAA 402827 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| |||| || ||||| ||||| | || || || | || Sbjct 405985 CATGCAGATTTTCGTTAAGACGTTGACTGGTAAAACCATCACACTTGAAGTGGAGGCTTC 405926 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || || |||| ||||||||| || | || || || || Sbjct 405925 GGACACAATCGAGAACGTTAAGGCGAAAATACAGGACAAGGAGGGTATTCCACCAGATCA 405866 Query 31312 GCAGCGTCTAATATTCGCTGGCAA 31335 ||||||||| || |||||||| || Sbjct 405865 GCAGCGTCTCATTTTCGCTGGTAA 405842 >seq2815 Length=71442 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || || |||||||||||||| | || || ||| |||| Sbjct 58083 ATGCAAATTTTCGTCAAGACCCTAACTGGCAAAACGATCACACTGGAAGTCGAAGCGTCG 58142 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| |||||| || || |||||||||||| | || ||||||||| Sbjct 58143 GACACCATCGAAAACGTCAAAGCGAAGATTCAGGACAAGGAAGGAATACCACCCGACCAG 58202 Query 31313 CAGCGTCTAATATTCGCTGG 31332 ||||| || || |||||||| Sbjct 58203 CAGCGCCTGATTTTCGCTGG 58222 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || || ||||||||||| | || || ||| | ||| Sbjct 58499 ATGCAGATTTTCGTGAAGACCCTCACTGGTAAAACGATCACACTTGAAGTCGAAGCCTCC 58558 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||||| ||||| || || |||||||| || | || ||||||||| Sbjct 58559 GATACTATCGAAAATGTCAAGGCGAAGATTCAAGACAAGGAGGGGATACCACCCGACCAG 58618 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || || || || || || || Sbjct 58619 CAACGACTCATTTTTGCCGG 58638 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || ||||||||||| | || || || |||| Sbjct 59587 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 59646 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| |||||| || || |||||||||||| | || ||||| ||| Sbjct 59647 GACACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAG 59706 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || || || || || || || Sbjct 59707 CAACGGCTCATCTTTGCAGG 59726 >seq1429 Length=437943 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| ||||| || ||||||||||| ||||| || ||||| | || ||||| |||| Sbjct 418609 CATGCAGATTTTTGTGAAGACTCTGACGGGCAAGACCATCACACTTGAGGTTGAGGCGTC 418668 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | |||||| || || | ||| ||||||||| || | || ||||| || Sbjct 418669 GGATACTATCGAAAACGTAAAGGCCAAAATTCAGGACAAGGAGGGTATCCCACCCGATCA 418728 Query 31312 GCAGCGTCTAATATTCGCTGG 31332 ||||||||||| ||||| || Sbjct 418729 ACAGCGTCTAATTTTCGCCGG 418749 >seq333 Length=310902 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||||||||| || || ||||| || |||||||| | || || ||| |||| Sbjct 40062 ATGCAGATTTTCGTAAAAACACTAACAGGAAAGACGATCACTCTTGAAGTGGAAGCGTCA 40121 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| |||| |||| || || |||||||| ||| | || || || || Sbjct 40122 GACACCATCGAGAACGTGAAAACCAAG-ATCCAAGACAAGGAGGGCATCCCACCGGATCA 40180 Query 31312 GCAGCGTCTAATATTCGCTGGCAA 31335 |||||||||||| ||||| || || Sbjct 40181 GCAGCGTCTAATCTTCGCCGGTAA 40204 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || ||||||||||| | || || || |||| Sbjct 44451 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 44510 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| |||||| || || |||||||||||| | || ||||| ||| Sbjct 44511 GACACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAG 44570 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || || || || || || || Sbjct 44571 CAACGGCTCATCTTTGCAGG 44590 >seq914 Length=351905 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 57998 AGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGAT 58057 ||| || |||||||| ||||| |||||||||||||||||| | |||||||| || || || Sbjct 95302 AGGGATCTTCTTTTCTGGCAGTTTTGCGGCAATATTTTGGTTAAAGAAACGTGGTCTTAT 95243 Query 58058 GCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 ||| || || || |||||| ||| | || || || || |||| Sbjct 95242 GCCAGGTCTTACACATAGCAATGAGCTTATTTCACGAGATGAGG 95199 >seq8483 Length=232 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || || ||||||||||| | || || ||| | ||| Sbjct 142 ATGCAGATTTTCGTGAAGACCCTCACTGGTAAAACGATCACACTTGAAGTCGAAGCCTCC 83 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||||| ||||| || || |||||||| || | || ||||||||| Sbjct 82 GATACTATCGAAAATGTCAAGGCGAAGATTCAAGACAAGGAGGGGATACCACCCGACCAG 23 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || || || || || || || Sbjct 22 CAACGACTCATTTTTGCCGG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445639038967440