Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq334 98.7 1e-15 seq2815 82.4 8e-11 seq333 82.4 8e-11 >seq334 Length=798041 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/147 (77%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 |||||| || |||| ||||| |||||||| || || |||||||| ||||| |||||| Sbjct 402827 TTTACCTGCGAAGATGAGACGCTGCTGATCTGGCGGGATGCCTTCCTTGTCCTGGATTTT 402886 Query 139681 TTGTTTTAGCTGTTC-CACTG-TGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCG 139738 | ||| | |||| || || |||||| | |||||| || | || | ||||||||| Sbjct 402887 A-GCCTTAAC-GTTCTCAATGGTGTCGGACGCCTCCACTTCGAGAGTGATAGTCTTGCCG 402944 Query 139739 GTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||| ||||| || |||||| Sbjct 402945 GTCAACGTTTTCACGAAGATCTGCATA 402971 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682 ||||||| |||| || ||||| || || ||||| ||||| |||||||| |||||| Sbjct 404255 TACCAGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCCTCTTTGTCTTGGATTTTCG 404314 Query 139683 GTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742 || | | || | |||||| | | ||||||||||| || | ||||||||| || | Sbjct 404315 CCTTGACGTTCTCAATTGTGTCTGATGCCTCCACCTCAAGAGTAATCGTCTTGCCAGTTA 404374 Query 139743 ACGTTTTTACGAATATTTGCATA 139765 |||| || ||||| || |||||| Sbjct 404375 ACGTCTTGACGAAGATCTGCATA 404397 Score = 82.4 bits (90), Expect = 8e-11 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| |||||||||||||| ||||| || || || || | || | || || ||||| Sbjct 402029 TGAAGGGTAGACTCTTTTTGGATGTTGTAGTCCGACAGAGTACGTCCA-TCCTCAAGCTG 402087 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||| || || | || || || ||||| || || || ||||| || || || ||| | | Sbjct 402088 TTTGCCCGCGAAAATAAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTATCC-TGAATCT 402146 Query 139681 TTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 | | ||| | | || | || |||| | ||||| || | || | ||||||||||| Sbjct 402147 TCGCTTTCACATTCTCGATAGTATCGGATGCTTCCACTTCCAGCGTGATCGTCTTGCCGG 402206 Query 139740 TCAACGTTTTTACGAATATTTGCATA 139765 | | ||| || ||||| ||||||||| Sbjct 402207 TAAGCGTCTTAACGAAGATTTGCATA 402232 >seq2815 Length=71442 Score = 82.4 bits (90), Expect = 8e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682 |||| ||| | || ||||||||||||||||| ||||| ||||||||||| ||| | || Sbjct 59292 TACCGGCAAAAATAAGACGTTGCTGATCGGGTGGTATTCCTTCTTTGTC-TTGAATCTTC 59234 Query 139683 G-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 | ||| | | ||| | ||||| | | ||| || || | || | ||| || ||||| Sbjct 59233 GCTTTGACATTTTCGATCGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTG 59174 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 | || || |||||||| |||||| Sbjct 59173 AGTGTCTTCACGAATATCTGCATA 59150 >seq333 Length=310902 Score = 82.4 bits (90), Expect = 8e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682 |||| ||| |||| || |||||||||||||| ||||| ||||| ||||| ||| | || Sbjct 44592 TACCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTC-CTGAATCTTC 44534 Query 139683 GTTTT-AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 ||||| | | ||| | ||||| | | ||| || || | || | ||| || ||||| Sbjct 44533 GTTTTGACGTTTTCGATGGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTG 44474 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 | || || |||||||| |||||| Sbjct 44473 AGTGTCTTCACGAATATCTGCATA 44450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495922268314400