Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2815 96.9 4e-15 seq333 87.8 2e-12 seq334 82.4 8e-11 >seq2815 Length=71442 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||| ||| | || ||||||||||||||||| ||||| ||||||||||| ||| || Sbjct 59292 TACCGGCAAAAATAAGACGTTGCTGATCGGGTGGTATTCCTTCTTTGTCTTGAATCTTCG 59233 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||| | | ||| | |||||||| | || ||||| | || | ||| || ||||| | Sbjct 59232 CTTTGACATTTTCGATCGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGA 59173 Query 143163 ATGTTTTTACGAATATTTGCATA 143185 ||| || |||||||| |||||| Sbjct 59172 GTGTCTTCACGAATATCTGCATA 59150 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||| ||| |||| || |||||||||||||| ||||| ||||| ||||| ||| || Sbjct 59728 TACCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCG 59669 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||| | | ||| | ||||||| | || ||||| | || | ||| || ||||| | Sbjct 59668 TTTTGACGTTTTCGATGGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGA 59609 Query 143163 ATGTTTTTACGAATATTTGCAT 143184 ||| || |||||||| ||||| Sbjct 59608 GTGTCTTCACGAATATCTGCAT 59587 >seq333 Length=310902 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||| ||| |||| || |||||||||||||| ||||| ||||| ||||| ||| || Sbjct 44592 TACCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCG 44533 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||| | | ||| | ||||||| | || ||||| | || | ||| || ||||| | Sbjct 44532 TTTTGACGTTTTCGATGGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGA 44473 Query 143163 ATGTTTTTACGAATATTTGCATA 143185 ||| || |||||||| |||||| Sbjct 44472 GTGTCTTCACGAATATCTGCATA 44450 >seq334 Length=798041 Score = 82.4 bits (90), Expect = 8e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 |||||| || |||| ||||| |||||||| || || |||||||| ||||| ||||| Sbjct 402827 TTTACCTGCGAAGATGAGACGCTGCTGATCTGGCGGGATGCCTTCCTTGTCCTGGATTTT 402886 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 || | | || | ||||| | | || ||||| | ||| | ||||||||||| Sbjct 402887 AGCCTTAACGTTCTCAATGGTGTCGGACGCCTCCACTTCGAGAGTGATAGTCTTGCCGGT 402946 Query 143161 CAATGTTTTTACGAATATTTGCATA 143185 ||| ||||| ||||| || |||||| Sbjct 402947 CAACGTTTTCACGAAGATCTGCATA 402971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506869539648240