Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq334 131 4e-25 seq2815 100 7e-16 seq333 100 7e-16 >seq334 Length=798041 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 ||||| | || | ||| || ||||| | ||||| ||||| || || || ||||| || Sbjct 402005 CCCCCGCGAAGACGAAGCACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCCGAC 402064 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||| | || || || || ||||| || || ||||| || | ||| || || || || Sbjct 402065 AGAGTACGTCCATCCTCAAGCTGTTTGCCCGCGAAAATAAGTCGCTGCTGGTCTGGTGGG 402124 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || || || |||||||||||||| ||||| ||||| || | |||||| | ||| || Sbjct 402125 ATGCCCTCCTTATCCTGAATCTTCGCTTTCACATTCTCGATAGTATCGGATGCTTCCACT 402184 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| || ||||| || || || || || ||||| Sbjct 402185 TCCAGCGTGATCGTCTTGCCGGTAAGCGTCTTAACGAAGATTTGCAT 402231 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||| || ||||| | ||| ||||||||||| |||||||| |||||||| ||||| || Sbjct 405228 CCAGCGAAGATTAGACGCTGCTGATCAGGAGGGATTCCTTCCTTATCCTGGATCTTAGCC 405287 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | || || | || ||||| || || || |||||||| || || Sbjct 405288 TTCACATTCTCGATCGTGTCAGAGGCCTCCACCTCCAGCGTGATCGTCTTACCCGTGAGG 405347 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || ||||| |||||||| Sbjct 405348 GTCTTGACAAAGATCTGCAT 405367 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || || | |||||||||||| ||||| ||||| || || || ||||| Sbjct 404766 TTACCAGCGAAGATAAGTCGCTGTTGATCAGGCGGTATGCCTTCCTTGTCTTGTATCTTC 404825 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| || || || | ||||| | || || || || || || ||||| || || Sbjct 404826 GCTTTCACGTTCTCGATCGTATCCGATGCCTCCACTTCAAGAGTTATCGTCTTTCCGGTG 404885 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || || || ||||| ||||||||| Sbjct 404886 AGGGTCTTGACAAAGATCTGCATT 404909 >seq2815 Length=71442 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| || | || ||||| || |||||||||||||| || |||||||| ||| Sbjct 59290 CCGGCAAAAATAAGACGTTGCTGATCGGGTGGTATTCCTTCTTTGTCTTGAATCTTCGCT 59231 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | || || | || || || || || || || ||||| || ||| Sbjct 59230 TTGACATTTTCGATCGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 59171 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || || ||||||||||| Sbjct 59170 GTCTTCACGAATATCTGCAT 59151 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| || |||| || ||||| || ||||||||||| || ||||||||||| | | Sbjct 59726 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 59667 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || ||||| | ||| || | || || || || || || || ||||| || ||| Sbjct 59666 TTGACGTTTTCGATGGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 59607 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || || |||||||||||| Sbjct 59606 GTCTTCACGAATATCTGCATT 59586 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||| ||||| || | ||| || || || ||||||||||| || ||||||||||| ||| Sbjct 58222 CCAGCGAAAATCAGGCGCTGCTGGTCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGCT 58163 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || ||||| | ||| || | ||| || || ||||| || || || ||||| || Sbjct 58162 TTGACGTTTTCGATGGTGTCCGACGCTTCGACTTCCAGTGTGATCGTTTTGCCAGTTAGG 58103 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || || || || ||||| Sbjct 58102 GTCTTGACGAAAATTTGCAT 58083 >seq333 Length=310902 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| || |||| || ||||| || ||||||||||| || ||||||||||| | | Sbjct 43330 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 43271 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || ||||| | |||||| | || || || || || || || ||||| || ||| Sbjct 43270 TTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 43211 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || || ||||||||||| Sbjct 43210 GTCTTCACGAATATCTGCAT 43191 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| || |||| || ||||| || ||||||||||| || ||||||||||| | | Sbjct 43582 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 43523 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || ||||| | |||||| | || || || || || || || ||||| || ||| Sbjct 43522 TTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 43463 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || || ||||||||||| Sbjct 43462 GTCTTCACGAATATCTGCAT 43443 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| || |||| || ||||| || ||||||||||| || ||||||||||| | | Sbjct 43834 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 43775 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || ||||| | |||||| | || || || || || || || ||||| || ||| Sbjct 43774 TTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 43715 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || || ||||||||||| Sbjct 43714 GTCTTCACGAATATCTGCAT 43695 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| || |||| || ||||| || ||||||||||| || ||||||||||| | | Sbjct 44086 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 44027 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || ||||| | |||||| | || || || || || || || ||||| || ||| Sbjct 44026 TTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 43967 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || || ||||||||||| Sbjct 43966 GTCTTCACGAATATCTGCAT 43947 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| || |||| || ||||| || ||||||||||| || ||||||||||| | | Sbjct 44338 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 44279 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || ||||| | |||||| | || || || || || || || ||||| || ||| Sbjct 44278 TTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 44219 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || || ||||||||||| Sbjct 44218 GTCTTCACGAATATCTGCAT 44199 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| || |||| || ||||| || ||||||||||| || ||||||||||| | | Sbjct 44590 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 44531 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || ||||| | ||| || | || || || || || || || ||||| || ||| Sbjct 44530 TTGACGTTTTCGATGGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 44471 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || || ||||||||||| Sbjct 44470 GTCTTCACGAATATCTGCAT 44451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151061206861756