Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2642 205 1e-48 seq1219 163 4e-36 seq2136 154 2e-33 seq896 154 2e-33 seq1200 95.1 2e-15 seq1484 91.5 2e-14 >seq2642 Length=345336 Score = 205 bits (226), Expect = 1e-48 Identities = 206/268 (77%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | || || ||||||||||| || ||||| || || ||||| Sbjct 185258 CGCGAAGCGTCATCGTAAGGTGCTGCGTGATAACATCCAGGGGATCACGAAACCTGCTAT 185317 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| |||||||||| |||||||| |||||| |||| ||| | |||| ||||||| Sbjct 185318 CCGTCGTTTGGCTCGTCGAGGTGGAGTAAAGCGTATCTCGGGACTCATCTACGAAGAGAC 185377 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || | ||| | |||||| ||| ||| |||| |||||| | |||| ||| Sbjct 185378 TCGTGGCGTCCTCAAGGTATTCCTCGAGAACGTGATCCGTGATGCAGTTACCTATTGCGA 185437 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| |||||||| || | |||||| | |||||||| | ||||||||||| Sbjct 185438 GCACGCCAAACGCAAGACTGTGACGGCGATGGATGTTGTCTATGCCCTCAAACGTCAAGG 185497 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | | | || || |||||| | ||| Sbjct 185498 CAGGACGCTGTACGGCTTTGGAGGCTAA 185525 Score = 199 bits (220), Expect = 6e-47 Identities = 205/268 (76%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | || || ||||||||||| |||||||| || || ||||| Sbjct 162432 CGCGAAGCGTCATCGTAAGGTGCTGCGTGATAACATCCAGGGAATCACGAAACCTGCTAT 162491 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| |||||||||| |||||||| |||||| |||| ||| | |||| ||||| | Sbjct 162492 CCGTCGTTTGGCTCGTCGAGGTGGAGTGAAGCGTATCTCGGGACTCATCTACGAAGAAAC 162551 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| | |||||| ||| ||| |||| ||| || || |||| ||| Sbjct 162552 CCGTGGCGTCCTCAAGGTATTCCTCGAGAACGTGATCCGTGACGCAGTCACCTATTGCGA 162611 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| |||||||| || | |||||| ||||||| ||| | ||||||||||| Sbjct 162612 GCACGCCAAACGCAAGACTGTGACAGCGATGGATGTCGTCTACGCACTCAAACGTCAAGG 162671 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | | | || || || ||| | ||| Sbjct 162672 CAGGACGCTGTACGGCTTCGGAGGCTAA 162699 Score = 194 bits (214), Expect = 3e-45 Identities = 203/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | || || ||||||||||| || ||||| || || |||||| Sbjct 168923 GCGAAGCGTCATCGTAAGGTGCTGCGTGATAACATCCAGGGGATCACGAAACCTGCTATC 168982 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||| |||||||||| |||||||| |||||| |||| ||| | |||| ||||||| | Sbjct 168983 AGACGTTTGGCTCGTCGAGGTGGAGTGAAGCGTATCTCGGGACTCATCTACGAAGAGACT 169042 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||| | |||||| ||| ||| |||| ||| || || |||| |||| Sbjct 169043 CGTGGCGTCCTCAAGGTATTCCTCGAGAACGTGATCCGTGACGCAGTCACCTATTGCGAG 169102 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| |||||||| || | |||||| |||||||||| | |||||||||||| Sbjct 169103 CACGCCAAACGCAAGACTGTAACGGCGATGGATGTCGTCTATGCCCTCAAACGTCAAGGC 169162 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | | || || || ||| | ||| Sbjct 169163 AGAACGCTATACGGCTTCGGAGGCTAA 169189 >seq1219 Length=419765 Score = 163 bits (180), Expect = 4e-36 Identities = 197/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||||| | || || |||||||||||||| ||||| || || || || Sbjct 329485 CGCGAAACGTCATCGCAAAGTGCTGCGTGATAACATCCAAGGGATCACTAAACCGGCCAT 329426 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| |||||||||| || ||||| |||||| |||| ||| | |||| ||||| | Sbjct 329425 CCGACGTTTGGCTCGTCGAGGCGGAGTTAAGCGTATCTCGGGACTCATCTACGAAGAAAC 329366 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || | ||| | |||||| ||| ||| |||| || || | ||| ||| Sbjct 329365 TCGTGGCGTCCTCAAGGTGTTCCTCGAGAACGTGATCCGCGACGCAGTAACATATTGCGA 329306 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || ||||| ||||| || || | ||||| |||||||||| | ||||| ||||| Sbjct 329305 GCATGCCAAACGCAAGACGGTGACGGCGATGGACGTCGTCTATGCCCTCAAACGCCAAGG 329246 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | | | || || || ||| | ||| Sbjct 329245 CAGGACGCTGTACGGCTTCGGAGGCTAA 329218 >seq2136 Length=213660 Score = 154 bits (170), Expect = 2e-33 Identities = 190/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| |||||||| | | ||||| || || || |||||||||||||||||||| || Sbjct 59137 GCTAAACGTCATCGTAAAGTGCTTCGTGACAATATTCAAGGAATCACCAAGCCAGCCATA 59196 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||||| || || ||||| ||| | || || ||| | || || |||| Sbjct 59197 CGTCGTCTTGCCCGTCGAGGGGGCGTCAAACGTATTTCGGGTTTGATTTACGAGGAGACG 59256 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| | || || ||| ||| || | ||||| || |||| |||| Sbjct 59257 CGAGGTGTGCTAAAGGTATTTCTGGAGAACGTGATTCGAGATGCAGTCACCTATTGCGAG 59316 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || |||||||| || || | ||||| | ||||| ||| | ||||||||||| Sbjct 59317 CATGCGAAGCGTAAGACAGTTACTGCGATGGACGTTGTCTACGCACTTAAACGTCAAGGA 59376 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| | | || || || || Sbjct 59377 CGTACGCTGTACGGATTCGG 59396 >seq896 Length=319833 Score = 154 bits (170), Expect = 2e-33 Identities = 195/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | || || ||||||||||| || ||||| || || || || Sbjct 265264 CGCAAAACGTCATCGTAAGGTGCTGCGTGATAACATCCAGGGTATCACGAAACCTGCGAT 265323 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| |||||||||| |||||||| |||||| |||| ||| | |||||||||| | Sbjct 265324 CCGTCGTTTGGCTCGTCGAGGTGGAGTGAAGCGTATCTCGGGACTCATCTATGAAGAAAC 265383 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || | || |||||||| | | ||| || | || || | |||| ||| Sbjct 265384 TCGTGGCGTCCTCAAAGTCTTCCTCGAAAACGTGATACGCGACGCAGTTACCTATTGCGA 265443 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| ||||| || || | ||||| | ||||| || | ||||| ||||| Sbjct 265444 GCACGCCAAACGCAAGACGGTAACGGCGATGGACGTTGTCTACGCCCTCAAACGCCAAGG 265503 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | |||| || || ||| | ||| Sbjct 265504 AAGGACGCTTTACGGCTTCGGAGGCTAA 265531 >seq1200 Length=90504 Score = 95.1 bits (104), Expect = 2e-15 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | ||||| ||||||||||| || || ||||| || || || Sbjct 87055 GCGAAGCGTCATCGTAAGGTACTTCGTGATAACATCCAGGGTATAACCAAACCTGCGATT 86996 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||||| ||||| || |||||| | || ||| | ||||||| |||| | Sbjct 86995 CGTCGTCTTGCCCGTCGAGGTGGTGTTAAGCGTATTTCCGGACTCATCTATGAGGAGACT 86936 Query 16553 CG 16554 || Sbjct 86935 CG 86934 >seq1484 Length=12376 Score = 91.5 bits (100), Expect = 2e-14 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | ||||| ||||||||||| || || ||||| || || || Sbjct 7887 GCGAAGCGTCATCGTAAGGTACTTCGTGATAACATCCAGGGTATAACCAAACCTGCGATT 7828 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||| || ||||| ||||| || |||||| | || ||| | ||||||| |||| Sbjct 7827 CGTCGTCTTGCCCGTCGAGGTGGTGTTAAGCGTATTTCCGGACTCATCTATGAGGAGA 7770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79054301684901