Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_007021.1 Length=130706 Score E Sequences producing significant alignments: (Bits) Value seq3162 464 5e-126 seq616 159 3e-34 >seq3162 Length=12458 Score = 464 bits (514), Expect = 5e-126 Identities = 893/1309 (68%), Gaps = 43/1309 (3%) Strand=Plus/Plus Query 81889 TAACGAAAAAAGTTAGACTTAAACCTACTAAACAACAGGAGTTAAAATTACGTAAATCAG 81948 || |||||||||||||| | | || | | || ||| ||| |||| | | | |||| Sbjct 4999 TATCGAAAAAAGTTAGATTGTATCCAAGTGAAATACAAGAGAAAAAACTTTGGCAGTCAG 5058 Query 81949 CAGATATAGCACGATTTATATATAATTGGACTTTAGCAAAACAACAAGAAAATTATAAAC 82008 | | ||| | ||||||||||||||||| | |||||||| ||||||||||| || Sbjct 5059 TTGGAACTGCAAGGTTTATATATAATTGGACACTTTCAAAACAAGAAGAAAATTATGAAA 5118 Query 82009 AAGGCAATAAATTTATACAAGATTCTGTGTTAAGAAAAGAAATAACACAATTAAAGAAAA 82068 | || ||||||||| | ||| | || ||||| ||| |||| | ||||||||| Sbjct 5119 ATGGTGGAAAATTTATATATGATGGAATTTTGAGAAAGGAATTAACCAAGCTAAAGAAAA 5178 Query 82069 CTGAAGAGTTTAGATGGTTAAATGAAGTAAGTAATAATATTCCTAAGCAAGCAGTTAAAG 82128 |||| || | ||||||||||||||| ||||||| || |||| ||||| || |||| Sbjct 5179 ATGAA---TTAAATTGGTTAAATGAAGTATCTAATAATGTTGCTAAACAAGCTGTAAAAG 5235 Query 82129 ATGCTTGTAATGCTTACaaaagattttttaaaaaacaatctggttttcctaaatttaaat 82188 |||||||||||||||| |||||||| || || | ||| | | || | |||| Sbjct 5236 ATGCTTGTAATGCTTATAAAAGATTCTTCAATGGATTATCAGATAAACCACGACTTAAGA 5295 Query 82189 cta---aaaagaaaaCAAGACCTAGTTTCTATAATGATACACAANNNNNNNNNNNNNNNN 82245 || |||||| | || | | ||||||||||||| | Sbjct 5296 GTAGAAAAAAGAGTAAAAAATCC---TTCTATAATGATAATGTAAAGTTAAAAGTTAAAG 5352 Query 82246 NNNNNNNNGTA-TTATTA--GAAAAAGTGGGTTGGGTTAGAACATCTGAACAATTACCTG 82302 || ||| || ||||| || |||||| | | ||| ||||||| ||||| Sbjct 5353 AAAATAGATTAGTTAATATTGAAAAGGTTGGTTGGATAAAAACTAATGAACAACTACCTA 5412 Query 82303 TAGGTACTAAGTACTACAATCCTAGAATCACTTTTGATGGTAAATATTGGTATATAAGTG 82362 | || |||||| |||||| | || | | |||| || ||||||||||| | Sbjct 5413 TTGGAGTTAAGTATAGTAATCCTCGTATATCATATGATAACAAGTATTGGTATATCTCGG 5472 Query 82363 TTTCTATTGAAGAAGAAAATAAATATGAAGAACTAACAAACGAATCTTTAGGTATTGATT 82422 | ||| ||| ||||| | | | ||||| ||||| | | ||| ||||| || || | Sbjct 5473 TAGGTATAGAAAAAGAACAAATTAAAGAAGATTTAACAGATGTATCATTAGGAATAGACT 5532 Query 82423 TAGGAATAAAAGAATTAGCCGTATGCTCTGATGG--AAGTATTTATGAAAATATTAACAA 82480 ||||| | ||| ||||| ||||||||||||| |||||||| |||||| || || Sbjct 5533 TAGGATTGAAAATTTTAGCAATATGCTCTGATGGTACAGTATTTA--GAAATATAAATAA 5590 Query 82481 AACAATAAG-AGTTAAAAAACTAGAAAAACGATTACGTAGATTGCAACGTAAGGTATCTC 82539 || || | ||||| ||| | ||||| ||||| ||| | ||| | | || | Sbjct 5591 AA-GTTATGTAGTTAGGAAAATTGAAAAGAGATTAAAAAGACTACAAAGACAAGTGAGTA 5649 Query 82540 GTAAATACCAAAATAATAAA----GAAGGGAGTACCTTTGTCAAAACTTGCAATATTATA 82595 | ||||| |||| |||||| ||| |||||| |||||||||| ||||| ||| Sbjct 5650 GAAAATATGAAAAAAATAAAAAAGGAAAGGAGTA----TGTCAAAACTAAAAATATAATA 5705 Query 82596 AAACTTGAAAAACAAATTAAACTCTTACAACGAAGATTGTCTAACATTCGTAAAAACTAT 82655 ||||||||||| || ||| | || |||||||| |||||||| | || |||||| Sbjct 5706 AAACTTGAAAAGTGTATACAACAAATCCATAGAAGATTGGCTAACATTAGAAATAACTAT 5765 Query 82656 TTACATCAAACAACAACTTCTATAGTGAAAACCAAACCTAGAAGAATTGTTATAGAAGAT 82715 | ||| ||| ||||| ||||||||||||||| || ||| |||| ||||||||| Sbjct 5766 CTTCATGAAAGTACAACAAGTATAGTGAAAACCAAGCCATACAGAGTTGTAATAGAAGAT 5825 Query 82716 TTGAATGTAAGTGGTATGATGAAGAATAGACACTTAGCTAAAGCAATACAAAAACAAGGA 82775 || ||||| | || |||||||| |||| ||| ||| || | || ||| ||||||||| Sbjct 5826 TTAAATGTTAAAGGAATGATGAAAAATAAACATTTATCTGATGCCATAAGAAAACAAGGT 5885 Query 82776 TTCTATGAGTTCCGTAAACAACTAGAATATAAGTGTGGAAGAAAAGGTATAGAACTTGTT 82835 || ||||| || | |||||| ||||||||||| | | ||| || || | || Sbjct 5886 TTTTATGAATTTAAAAGACAACTTCAATATAAGTGTAAATTTAGAGGAATTGAGTTAGTA 5945 Query 82836 ATTGCAGATAGATTCTTTCCTTCTAGTAAAACATGCTCTAATTGTGGTAACATCCACAAA 82895 | ||||||||||| | ||| || || || || | | ||||| || | | ||| Sbjct 5946 GTAGCAGATAGATTTTATCCATCATCAAAGACTTGTAGTCAATGTGGAAAGGTTAAAAAA 6005 Query 82896 AACTTAAAACTATCAGATAGAATATTTAAGTGTGACTGTGGTTTTAGTATTGATAGAGAC 82955 | |||||||| ||||||| | | ||| ||| |||||| ||| |||||||||||| Sbjct 6006 GATTTAAAACTTAAAGATAGAGTTTATAAATGTAGCTGTGGACTTAATATTGATAGAGAT 6065 Query 82956 CTTAATGCTAGTATTAATTTAGCTAATTATAATATT--TAGATTATCACTAATAAGATAC 83013 | || || ||||||||| | | || ||||| ||| | | ||||||||| |||||| Sbjct 6066 TTAAACGCAAGTATTAATCTTTCAAAATATAA-ATTAGCATAATATCACTAAGAAGATAA 6124 Query 83014 TAAATATATGTACCATTCGTTGTATGGGAATTTAAGCCTTTGGAGTATCATACAAACTTG 83073 | ||||||| || |||||||| ||||||| ||| | |||| | |||| || Sbjct 6125 TGCTGATATGTAGGATGCGTTGTATCCGAATTTACGCCCTCGGAGAGTTATACCAA---- 6180 Query 83074 AGTAGAGTAAATGAATA-TAGTAATTTACTCAAAAGGGGATACGTTGAAAAAGGAATATA 83132 || | |||| || | || | || ||| |||||| || ||| ||| | ||||| | Sbjct 6181 AGGAAAGTAGATTACTATTTATAGTTT--TCAAAATCTGACTCGTAGAACAGGGAATTAA 6238 Query 83133 A-----TTTATAAAGTTTTATAAATTTTTGACAACGGGAATCATATGTT 83176 | |||||| | |||||| ||||||| |||||| | | |||||| Sbjct 6239 ACAAGGTTTATAGATATTTATAGATTTTTGGCAACGGAAGT--TATGTT 6285 >seq616 Length=43856 Score = 159 bits (176), Expect = 3e-34 Identities = 352/518 (68%), Gaps = 20/518 (4%) Strand=Plus/Plus Query 82578 AAAACTTGCAATATTATAAAACTTGAAAAACAAATTAAACTCTTACAACGAAGATTGTCT 82637 |||||| ||||| |||||| |||||||||| || ||| | | ||| || |||| | Sbjct 37438 AAAACTCAAAATATCATAAAAATTGAAAAACAGATAAAAATTGTTCAAAAAAAATTG-CA 37496 Query 82638 AACATTCGTAAAAACTATTTACATCAAACAACAACTTCTATAGTGAAAACCAAACCTAGA 82697 | ||| | ||| | |||||||||| | | | | ||||||||||| || ||| | Sbjct 37497 GATATTAGATTAAATCACATACATCAAACTATTAATACAATAGTGAAAACTAAGCCTTGT 37556 Query 82698 AGAATTGTTATAGAAGATTTGAATGTAAGTGGTATGATGAAGAATAGACACTTAGCTAAA 82757 ||| | || | |||||||| ||||||| || ||||| || |||| ||| ||| ||||| Sbjct 37557 AGAGTAGTAGTTGAAGATTTAAATGTAAAAGGAATGATAAAAAATAAACATTTATCTAAA 37616 Query 82758 GCAATACAAAAACAAGGATTCTATGAGTTCCGTAAACA-ACTAGAATATAAGTGTGGAAG 82816 || || | ||||| | || || | || || | ||| |||||||| | | | Sbjct 37617 GCGATTTCAGAACAATGTTTTAATAAATT-TATAGCTATACTTGAATATAAATTTAAGTG 37675 Query 82817 AAAAGGTATAGAACTTGTTATTGCAGATAGATTCTTTCCTTCTAGTAAAACATGCTCTAA 82876 || || || ||| |||||| ||||||||||| | ||| ||||||| || ||| Sbjct 37676 GAATGGAATTGAATTTGTTAAAGCAGATAGATTTTATCCAAGTAGTAAACTTTGTTCTTG 37735 Query 82877 TTGTGGTAACATCCACAAAAACTTAAAACTATCAGATAGAA--TATTTAAGT-------G 82927 |||| | ||| | || | |||| |||| |||||| | ||| || || Sbjct 37736 TTGTAAAACTATCAAAAAGGATTTAAGACTAAAAGATAGGACCTATATATGTACCAATCC 37795 Query 82928 TGACTGTGGTTTTAGTATTGATAGAGACCTTAATGCTAGTATTAATTTAGCTAATTATAA 82987 | ||| | ||| ||| ||||||| ||||| |||||||||||||| |||||||| Sbjct 37796 AAAGTGTAATCTTATAATTCATAGAGATAAAAATGCAAGTATTAATTTAGCAAATTATAA 37855 Query 82988 TATT----TAGATTATC-ACTAATAAGATACTAAATATATGTA-CCATTCGTTGTATGGG 83041 ||| |||| ||| | ||| ||||| | ||||||| |||| | | | Sbjct 37856 -ATTAGCATAGAAAATCAAATAAAAAGATTATGCTAATATGTAGACATTGACTAGGT-CG 37913 Query 83042 AATTTAAGCCTTTGGAGTATCATACAAACTTGAGTAGA 83079 |||||||||||||||| | ||| ||||| ||||||| Sbjct 37914 AATTTAAGCCTTTGGACTGCTATATAAACTAGAGTAGA 37951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418017920430859