Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq334 100 2e-16 seq2815 96.9 3e-15 >seq334 Length=798041 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | || |||||| ||||||| |||| |||||| | ||| Sbjct 403681 ATGCAGATCTTCGTGAAGACTCTTACGGGTAAAACCATCACGCTCGAGGTGGAGGCTTCT 403622 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| ||| ||| ||||| || || || |||||||||||| Sbjct 403621 GACACGATCGAGAACGTTAAGGCAAAGATCCAGGACAAGGAGGGCATCCCACCTGACCAA 403562 Query 25119 CAGCGGATTATTTTTGCCGG 25138 |||||| | || || || || Sbjct 403561 CAGCGGCTGATCTTCGCTGG 403542 Score = 82.4 bits (90), Expect = 7e-11 Identities = 110/151 (73%), Gaps = 8/151 (5%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| | || || || | ||||| ||||||||||| | || Sbjct 407943 ATGCAAATCTTCGTGAAGACTCTCACTGGCAAGACGATCACTCTCGAAGTGGAGGCATCG 407884 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| | || || | ||| ||||| || || || |||||||| Sbjct 407883 GATACGATTGAAAACGTCA---AGGCTAAGATTCAA-GACAAGGAGGGCATCCCACCTGA 407828 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAA 25145 ||||||||| | || ||||| ||||| ||| Sbjct 407827 CCAACAGCGTCTCATCTTTGCAGGCAAGCAA 407797 >seq2815 Length=71442 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/144 (76%), Gaps = 8/144 (6%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| ||||| || ||||| | ||||||||| | ||||| | ||||| ||| |||| Sbjct 59151 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 59210 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| |||| || | ||| ||||||||||| || ||||| || Sbjct 59211 GACACGATCGAAAATGTCA---AAGCGAAGATTCAA-GACAAAGAAGGAATACCACCCGA 59266 Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138 || || || ||||||||||||| Sbjct 59267 TCAGCAACGTCTTATTTTTGCCGG 59290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433207287954455