Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq8483 113 4e-20 seq2815 113 4e-20 seq333 100 2e-16 seq334 96.9 3e-15 seq1429 91.5 1e-13 >seq8483 Length=232 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || ||||||||| |||| |||||||| ||| || || Sbjct 142 ATGCAGATTTTCGTGAAGACCCTCACTGGTAAAACGATCACACTTGAAGTCGAAGCCTCC 83 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || |||| || ||||||||||||||||| || |||||||| || Sbjct 82 GATACTATCGAAAATGTCAAGGCGAAGATTCAAGACAAGGAGGGGATACCACCCGACCAG 23 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||| || || |||||||| Sbjct 22 CAACGACTCATTTTTGCCGG 3 >seq2815 Length=71442 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || ||||||||| |||| |||||||| ||| || || Sbjct 58499 ATGCAGATTTTCGTGAAGACCCTCACTGGTAAAACGATCACACTTGAAGTCGAAGCCTCC 58558 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || |||| || ||||||||||||||||| || |||||||| || Sbjct 58559 GATACTATCGAAAATGTCAAGGCGAAGATTCAAGACAAGGAGGGGATACCACCCGACCAG 58618 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||| || || |||||||| Sbjct 58619 CAACGACTCATTTTTGCCGG 58638 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | |||||||||||| |||| || ||||| || | | Sbjct 59151 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 59210 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| || ||||||||||| || || || ||||||||||| Sbjct 59211 GACACGATCGAAAATGTCAAAGCGAAGATTCAAGACAAAGAAGGAATACCACCCGATCAG 59270 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||||||||| |||||||| Sbjct 59271 CAACGTCTTATTTTTGCCGG 59290 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 22204 TATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTT 22263 ||| || | | || |||||||||||| || || || |||| || |||||| |||| || Sbjct 58068 TATTCAGTCGCAACGATGCAAATTTTCGTCAAGACCCTAACTGGCAAAACGATCACACTG 58127 Query 22264 GAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGT 22323 ||||| ||| | | || ||| | || | ||||| || ||||| |||||||| || Sbjct 58128 GAAGTCGAAGCGTCGGACACCATCGAAAACGTCAAAGCGAAGATTCAGGACAAGGAAGGA 58187 Query 22324 ATTCCACCCGATCAACAACGTCTTATATTTGCCGG 22358 || |||||||| || || || || || || || || Sbjct 58188 ATACCACCCGACCAGCAGCGCCTGATTTTCGCTGG 58222 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | |||||||||||| |||| || ||||| || | | Sbjct 59587 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 59646 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | ||||| || ||||| |||||||| || || ||||||||||| Sbjct 59647 GACACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAG 59706 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||| || || ||||| || Sbjct 59707 CAACGGCTCATCTTTGCAGG 59726 >seq333 Length=310902 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || ||||| |||| || || ||| ||||||||||||||||| | | Sbjct 40062 ATGCAGATTTTCGTAAAAACACTAACAGGAAAGACGATCACTCTTGAAGTGGAAGCGTCA 40121 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | ||| || || |||||||||||||| || ||||| ||||| Sbjct 40122 GACACCATCGAGAACGTGAAAACCAAGATCCAAGACAAGGAGGGCATCCCACCGGATCAG 40181 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 || ||||| || || ||||| || Sbjct 40182 CAGCGTCTAATCTTCGCCGGTAA 40204 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | |||||||||||| |||| || ||||| || | | Sbjct 43191 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 43250 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | ||||| || ||||| |||||||| || || ||||||||||| Sbjct 43251 GATACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAG 43310 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||| || || ||||| || Sbjct 43311 CAACGGCTCATCTTTGCAGG 43330 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | |||||||||||| |||| || ||||| || | | Sbjct 43443 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 43502 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | ||||| || ||||| |||||||| || || ||||||||||| Sbjct 43503 GATACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAG 43562 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||| || || ||||| || Sbjct 43563 CAACGGCTCATCTTTGCAGG 43582 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | |||||||||||| |||| || ||||| || | | Sbjct 43695 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 43754 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | ||||| || ||||| |||||||| || || ||||||||||| Sbjct 43755 GATACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAG 43814 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||| || || ||||| || Sbjct 43815 CAACGGCTCATCTTTGCAGG 43834 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | |||||||||||| |||| || ||||| || | | Sbjct 43947 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 44006 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | ||||| || ||||| |||||||| || || ||||||||||| Sbjct 44007 GATACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAG 44066 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||| || || ||||| || Sbjct 44067 CAACGGCTCATCTTTGCAGG 44086 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | |||||||||||| |||| || ||||| || | | Sbjct 44199 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 44258 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | ||||| || ||||| |||||||| || || ||||||||||| Sbjct 44259 GATACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAG 44318 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||| || || ||||| || Sbjct 44319 CAACGGCTCATCTTTGCAGG 44338 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | |||||||||||| |||| || ||||| || | | Sbjct 44451 ATGCAGATATTCGTGAAGACACTCACCGGTAAAACGATCACGCTGGAAGTCGAGGCGTCG 44510 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | ||||| || ||||| |||||||| || || ||||||||||| Sbjct 44511 GACACCATCGAAAACGTCAAAACGAAGATTCAGGACAAGGAAGGAATACCACCCGATCAG 44570 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||| || || ||||| || Sbjct 44571 CAACGGCTCATCTTTGCAGG 44590 >seq334 Length=798041 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | || || || ||| ||||||| |||||||| | | Sbjct 407943 ATGCAAATCTTCGTGAAGACTCTCACTGGCAAGACGATCACTCTCGAAGTGGAGGCATCG 407884 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | |||| || ||||||||||||||||| || ||||| || ||| Sbjct 407883 GATACGATTGAAAACGTCAAGGCTAAGATTCAAGACAAGGAGGGCATCCCACCTGACCAA 407824 Query 22339 CAACGTCTTATATTTGCCGGCAAACA 22364 || ||||| || ||||| ||||| || Sbjct 407823 CAGCGTCTCATCTTTGCAGGCAAGCA 407798 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| ||||| || || || |||||||| |||| ||||||||||| | | Sbjct 405984 ATGCAGATTTTCGTTAAGACGTTGACTGGTAAAACCATCACACTTGAAGTGGAGGCTTCG 405925 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || ||||| || |||||||||||||||||||| ||||| Sbjct 405924 GACACAATCGAGAACGTTAAGGCGAAAATACAGGACAAGGAGGGTATTCCACCAGATCAG 405865 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 || ||||| || || || || || Sbjct 405864 CAGCGTCTCATTTTCGCTGGTAA 405842 >seq1429 Length=437943 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || ||| | || || || || |||| ||||| || || | | Sbjct 418610 ATGCAGATTTTTGTGAAGACTCTGACGGGCAAGACCATCACACTTGAGGTTGAGGCGTCG 418669 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | || |||||||| |||||||||||||| |||||||||||| Sbjct 418670 GATACTATCGAAAACGTAAAGGCCAAAATTCAGGACAAGGAGGGTATCCCACCCGATCAA 418729 Query 22339 CAACGTCTTATATTTGCCGG 22358 || ||||| || || ||||| Sbjct 418730 CAGCGTCTAATTTTCGCCGG 418749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419611076502205