Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq334 152 1e-31 seq333 109 1e-18 seq1429 107 5e-18 seq2815 105 2e-17 >seq334 Length=798041 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | ||| || ||||||| || ||||||||||| || ||||| | Sbjct 402005 CCCCCGCGAAGACGAAGCACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCCGAC 402064 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| || || | ||||| || ||||| || || ||||| || |||| Sbjct 402065 AGAGTACGTCCATCCTCAAGCTGTTTGCCCGCGAAAATAAGTCGCTGCTGGTCTGGTGGG 402124 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || |||||||| || ||||||||||| || || |||| |||| | ||| ||| Sbjct 402125 ATGCCCTCCTTATCCTGAATCTTCGCTTTCACATTCTCGATAGTATCGGATGCTTCCACT 402184 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||| ||||| || ||||| ||||| || ||||| Sbjct 402185 TCCAGCGTGATCGTCTTGCCGGTAAGCGTCTTAACGAAGATTTGCAT 402231 Score = 113 bits (124), Expect = 1e-19 Identities = 114/147 (78%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGAT 288386 ||| ||||||||||| |||||||| || |||| ||||| ||||| || |||||||| Sbjct 402827 TTTACCTGCGAAGATGAGACGCTGCTG---ATCTGGCGGGATGCCTTCCTTGTCCTGGAT 402883 Query 288387 TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 ||| || || ||||| || || | ||| || || |||||||| ||||| ||||| || Sbjct 402884 TTTAGCCTTAACGTTCTCAATGGTGTCGGACGCCTCCACTTCGAGAGTGATAGTCTTGCC 402943 Query 288447 GGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| |||||||| Sbjct 402944 GGTCAACGTTTTCACGAAGATCTGCAT 402970 Score = 105 bits (116), Expect = 2e-17 Identities = 116/153 (76%), Gaps = 6/153 (4%) Strand=Plus/Plus Query 288327 TTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT 288386 ||| || ||||| ||||| ||||||||||| | |||||| || || || || || || Sbjct 407797 TTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCAGGTGGGATGCCCTCCTTGTCTTGAAT 407856 Query 288387 TTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTT 288443 || || || |||||||| || | ||| |||| || |||||||| ||||||||||| Sbjct 407857 CTTAGCCTTGACGTTTTCAATCGTATC---CGATGCCTCCACTTCGAGAGTGATCGTCTT 407913 Query 288444 CCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 || || |||||||| ||||| || ||||| || Sbjct 407914 GCCAGTGAGAGTCTTCACGAAGATTTGCATGAT 407946 Score = 104 bits (114), Expect = 6e-17 Identities = 112/147 (76%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || |||||||| || ||||||||| | || || ||||| || || || || ||| Sbjct 404766 TTACCAGCGAAGATAAGTCGCTGTTGATCAGGCGGTATGCCTTCCTTGTCTTGTATCTTC 404825 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCG 288447 ||||||||||| || || | ||| |||| || ||||| || || |||||||| ||| Sbjct 404826 GCTTTCACGTTCTCGATCGTATC---CGATGCCTCCACTTCAAGAGTTATCGTCTTTCCG 404882 Query 288448 GTCAGAGTCTTGACGAATATCTGCATT 288474 || || |||||||| || ||||||||| Sbjct 404883 GTGAGGGTCTTGACAAAGATCTGCATT 404909 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||| |||||||| ||| | ||||||||||| ||||||||||| || || Sbjct 405228 CCAGCGAAGATTAGACGCTGCTGATCAGGAGGGATTCCTTCCTTATCCTGGATCTTAGCC 405287 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| || || || | || | || || || |||||||||||||| || || || Sbjct 405288 TTCACATTCTCGATCGTGTCAGAGGCCTCCACCTCCAGCGTGATCGTCTTACCCGTGAGG 405347 Query 288454 GTCTTGACGAATATCTGCAT 288473 |||||||| || |||||||| Sbjct 405348 GTCTTGACAAAGATCTGCAT 405367 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || ||||||||||| |||||||| | |||||| || || || |||||||| || || Sbjct 403542 CCAGCGAAGATCAGCCGCTGTTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTTGCC 403601 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || ||||| || || | || | || || ||||||||||| || || || || ||| Sbjct 403602 TTAACGTTCTCGATCGTGTCAGAAGCCTCCACCTCGAGCGTGATGGTTTTACCCGTAAGA 403661 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| Sbjct 403662 GTCTTCACGAAGATCTGCAT 403681 >seq333 Length=310902 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||| ||||| || || || ||| ||| |||||||| || ||||| || |||| | Sbjct 43330 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 43271 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || |||||||| || | ||| || || ||||| ||||||||||| || ||||| || Sbjct 43270 TTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 43211 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| |||||||||||||| Sbjct 43210 GTCTTCACGAATATCTGCAT 43191 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||| ||||| || || || ||| ||| |||||||| || ||||| || |||| | Sbjct 43582 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 43523 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || |||||||| || | ||| || || ||||| ||||||||||| || ||||| || Sbjct 43522 TTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 43463 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| |||||||||||||| Sbjct 43462 GTCTTCACGAATATCTGCAT 43443 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||| ||||| || || || ||| ||| |||||||| || ||||| || |||| | Sbjct 43834 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 43775 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || |||||||| || | ||| || || ||||| ||||||||||| || ||||| || Sbjct 43774 TTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 43715 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| |||||||||||||| Sbjct 43714 GTCTTCACGAATATCTGCAT 43695 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||| ||||| || || || ||| ||| |||||||| || ||||| || |||| | Sbjct 44086 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 44027 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || |||||||| || | ||| || || ||||| ||||||||||| || ||||| || Sbjct 44026 TTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 43967 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| |||||||||||||| Sbjct 43966 GTCTTCACGAATATCTGCAT 43947 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||| ||||| || || || ||| ||| |||||||| || ||||| || |||| | Sbjct 44338 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 44279 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || |||||||| || | ||| || || ||||| ||||||||||| || ||||| || Sbjct 44278 TTGACGTTTTCGATGGTATCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 44219 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| |||||||||||||| Sbjct 44218 GTCTTCACGAATATCTGCAT 44199 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||| ||||| || || || ||| ||| |||||||| || ||||| || |||| | Sbjct 44590 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 44531 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || |||||||| || | || || || ||||| ||||||||||| || ||||| || Sbjct 44530 TTGACGTTTTCGATGGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 44471 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| |||||||||||||| Sbjct 44470 GTCTTCACGAATATCTGCAT 44451 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || |||||||| |||||||| ||| |||||| || || || || ||||| || Sbjct 40204 TTACCGGCGAAGATTAGACGCTGCTGATCCGGTGGGATGCCCTCCTTGTCTTGGATCTTG 40145 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 | ||||||||| || || | || || ||| ||||| || ||||||||||| || || Sbjct 40144 GTTTTCACGTTCTCGATGGTGTCTGACGCTTCCACTTCAAGAGTGATCGTCTTTCCTGTT 40085 Query 288451 AGAGTCTTGACGAATATCTGCATTAT 288476 || || || ||||| ||||||||||| Sbjct 40084 AGTGTTTTTACGAAAATCTGCATTAT 40059 Score = 96.9 bits (106), Expect = 8e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || ||||| || |||||||| || |||||| || || || || || || ||| Sbjct 45045 TTACCGGCGAAAATGAGACGCTGCTGGTCGGGTGGGATACCCTCCTTGTCTTGAATCTTC 44986 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || ||||||||||| || | ||| || || ||||| | ||| |||||||| ||||| Sbjct 44985 GCCTTCACGTTTTCGATTGTATCTGACGCCTCGACTTCCAACGTTATCGTCTTGCCGGTG 44926 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || |||||||| || |||||||| Sbjct 44925 AGTGTCTTGACAAAGATCTGCAT 44903 >seq1429 Length=437943 Score = 107 bits (118), Expect = 5e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || ||||| || |||||||||||| |||||| || || || ||||| ||||| || Sbjct 418749 CCGGCGAAAATTAGACGCTGTTGATCGGGTGGGATACCCTCCTTGTCCTGAATTTTGGCC 418690 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || |||||||| |||| ||| || || || || || ||||| ||||| || |||||| Sbjct 418689 TTTACGTTTTCGATAGTATCCGACGCCTCAACCTCAAGTGTGATGGTCTTGCCCGTCAGA 418630 Query 288454 GTCTTGACGAATATCTGCATTATG 288477 ||||| || || |||||||| ||| Sbjct 418629 GTCTTCACAAAAATCTGCATGATG 418606 >seq2815 Length=71442 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||| ||||| || || || ||| ||| |||||||| || ||||| || |||| | Sbjct 59726 CCTGCAAAGATGAGCCGTTGCTGATCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGTT 59667 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || |||||||| || | || || || ||||| ||||||||||| || ||||| || Sbjct 59666 TTGACGTTTTCGATGGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 59607 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| ||||||||||||||| Sbjct 59606 GTCTTCACGAATATCTGCATT 59586 Score = 105 bits (116), Expect = 2e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || ||||| || |||||||| || | |||||| || || || ||||| || ||| Sbjct 60178 TTACCGGCGAAAATTAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGAATCTTC 60119 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || ||||||||||| || | ||| || || ||||| | ||| |||||||| ||||| Sbjct 60118 GCCTTCACGTTTTCGATTGTATCCGACGCCTCGACTTCCAACGTTATCGTCTTGCCGGTG 60059 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || |||||||| || |||||||| Sbjct 60058 AGTGTCTTGACAAAGATCTGCAT 60036 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || ||||| ||||| ||||| || ||| |||||||| || ||||| || |||||| Sbjct 58222 CCAGCGAAAATCAGGCGCTGCTGGTCGGGTGGTATTCCTTCCTTGTCCTGAATCTTCGCT 58163 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || |||||||| || | || || ||| ||||| || |||||||| || || || || Sbjct 58162 TTGACGTTTTCGATGGTGTCCGACGCTTCGACTTCCAGTGTGATCGTTTTGCCAGTTAGG 58103 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||||||||| || ||||| Sbjct 58102 GTCTTGACGAAAATTTGCAT 58083 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || || ||||| || ||| ||| ||||||||||| || || || |||||| Sbjct 59290 CCGGCAAAAATAAGACGTTGCTGATCGGGTGGTATTCCTTCTTTGTCTTGAATCTTCGCT 59231 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || ||||| || | || || || ||||| ||||||||||| || ||||| || Sbjct 59230 TTGACATTTTCGATCGTGTCCGACGCCTCGACTTCCAGCGTGATCGTTTTACCGGTGAGT 59171 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| |||||||||||||| Sbjct 59170 GTCTTCACGAATATCTGCAT 59151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179308931942046