Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq334 116 4e-21 seq233 89.7 6e-13 seq2830 87.8 2e-12 seq3105 86.0 7e-12 seq2202 86.0 7e-12 seq3568 84.2 2e-11 seq2612 84.2 2e-11 seq1683 84.2 2e-11 seq2815 82.4 8e-11 >seq334 Length=798041 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| ||||| || ||||| || | |||||| || | || || ||||| || || ||||| Sbjct 402040 CTCTTTTTGGATGTTGTAGTCCGACAGAGTACGTCCATCCTCAAGCTGTTTGCCCGCGAA 402099 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || |||||||||||||| | ||| | || |||||| ||| ||| | || | ||| | Sbjct 402100 AATAAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTATCC-TGAATCTTCGCTTTCACAT 402158 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 || | | || ||| | |||||| || | |||||| || ||||| || |||||||| | Sbjct 402159 TCTCGATAGTATCGGATGCTTCCACTTCCAGCGTGATCGTCTTGCCGGTAAGCGTCTTAA 402218 Query 42196 CAAAGATTTGCAT 42208 | ||||||||||| Sbjct 402219 CGAAGATTTGCAT 402231 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 42068 ACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG 42127 ||||||||| || || ||||| ||||| | ||| | || |||||||||| ||| ||| Sbjct 403541 ACCAGCGAAGATCAGCCGCTGTTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTTTGC 403600 Query 42128 TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 42187 || | || | | |||||| | ||||| |||| |||||||||||| ||||| || Sbjct 403601 CTTAACGTTCTCGATCGTGTCAGAAGCCTCCACCTCGAGCGTGATGGTTTTACCCGTAAG 403660 Query 42188 CGTCTTTACAAAGATTTGCAT 42208 ||||| || ||||| ||||| Sbjct 403661 AGTCTTCACGAAGATCTGCAT 403681 >seq233 Length=652816 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 651578 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 651519 Query 57067 TACTACCGAGGATT 57080 |||||||||||||| Sbjct 651518 TACTACCGAGGATT 651505 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | | ||||||||| ||||| | ||||||||||| ||||||||||||| Sbjct 652622 CTCCCCGGCCGGCATTCGAACCCTTGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 652563 Query 57067 TACTACCGAGGATT 57080 |||||||||||||| Sbjct 652562 TACTACCGAGGATT 652549 >seq2830 Length=637951 Score = 87.8 bits (96), Expect = 2e-12 Identities = 76/93 (82%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| | |||| |||| | |||||||||| |||||| | ||||||||||| ||||| Sbjct 209120 AAAAACTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACT 209061 Query 57059 CACCACTATACTACCGAGGA-TTGAATATATAA 57090 |||||||||||||||||||| || ||| || || Sbjct 209060 CACCACTATACTACCGAGGACTTCAATGTACAA 209028 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 150755 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 150814 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 150815 TACTACCGAGGA 150826 >seq3105 Length=1056644 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 657665 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 657606 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 657605 TACTACCGAGGA 657594 >seq2202 Length=155475 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 7358 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 7299 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 7298 TACTACCGAGGA 7287 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 8585 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 8526 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 8525 TACTACCGAGGA 8514 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 12153 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 12094 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 12093 TACTACCGAGGA 12082 >seq3568 Length=233 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | ||||||| || |||||| | ||||||||||| ||||||||||||| Sbjct 52 CTCCCCGGCGGGGAATCGAAACCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 111 Query 57067 TACTACCGAGGATT 57080 |||||||||||||| Sbjct 112 TACTACCGAGGATT 125 >seq2612 Length=248643 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 248246 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 248305 Query 57067 TACTACCGAGGATT 57080 |||| ||||||||| Sbjct 248306 TACTCCCGAGGATT 248319 >seq1683 Length=790 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||| | ||||||||||| ||||||||||||| Sbjct 198 CTCCCCGGCCGGGAATCGAACCCGGGTCTGGCACGTGACAGGCGCGGATACTCACCACTA 257 Query 57067 TACTACCGAGGATT 57080 |||||||||||||| Sbjct 258 TACTACCGAGGATT 271 >seq2815 Length=71442 Score = 82.4 bits (90), Expect = 8e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 42068 ACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG 42127 ||||||||| || || ||||||||||||| ||| | | ||||||||| ||| | || | Sbjct 58223 ACCAGCGAAAATCAGGCGCTGCTGGTCGGGTGGTATTCCTTCCTTGTCC-TGAATCTTCG 58165 Query 42128 -TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 42186 ||||| | | | ||||| || ||| || || | ||||| |||||||| |||| Sbjct 58164 CTTTGACGTTTTCGATGGTGTCCGACGCTTCGACTTCCAGTGTGATCGTTTTGCCAGTTA 58105 Query 42187 GCGTCTTTACAAAGATTTGCAT 42208 | ||||| || || |||||||| Sbjct 58104 GGGTCTTGACGAAAATTTGCAT 58083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543057597312880