Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxocara_20canis_20[genbank_20GCA_5F000803305.1_202014-12-18] 22,857 sequences; 317,115,901 total letters Query= NC_011167.1 Length=53104 Score E Sequences producing significant alignments: (Bits) Value seq3162 444 2e-120 seq616 120 1e-22 >seq3162 Length=12458 Score = 444 bits (492), Expect = 2e-120 Identities = 877/1298 (68%), Gaps = 40/1298 (3%) Strand=Plus/Minus Query 41822 CCGTTGCCAAAACCTTATAAAAATCTAAAAAGTTTGTTTATTTCCCTGTTCTACGTGTCC 41881 |||||||||||| |||||| ||||| ||| ||||||| |||||||||||||| ||| Sbjct 6275 CCGTTGCCAAAAATCTATAAATATCTATAAACCTTGTTTAATTCCCTGTTCTACGAGTCA 6216 Query 41882 GATTTGGCCAA------------AGCTACTTTCGTTTGATATAACACTCCGAGGGCGTAA 41929 ||||| | || | |||||||| |||| |||||| |||||||||||||| Sbjct 6215 GATTTTGAAAACTATAAATAGTAATCTACTTTCCTTTGGTATAACTCTCCGAGGGCGTAA 6156 Query 41930 ATTCGGATACAACGAATCCTACATATTAGCAATAACGTTTAGGTGTTAATTTGCTAATTG 41989 |||||||||||||| ||||||||||| |||| || | | | ||| || | |||||||| Sbjct 6155 ATTCGGATACAACGCATCCTACATATCAGCATTATCTTCTTAGTGATATTATGCTAATTT 6096 Query 41990 ATAATATGATAAGTTGATAGATGCATTTAAATCCCTATCCATTACAAGACCGCAATCACA 42049 ||| | ||| | || ||| ||| |||||||| ||||| || ||| || || ||| Sbjct 6095 ATATTTTGAAAGATTAATACTTGCGTTTAAATCTCTATCAATATTAAGTCCACAGCTACA 6036 Query 42050 GCGATATACTCGGTCAGATAACTTTAGGTCTTTCTTAACGCTTCCACAACATGAACACA- 42108 ||| |||| || | |||| ||||| ||||| ||||||| ||| ||| Sbjct 6035 TTTATAAACTCTATCTTTAAGTTTTAAATCTTTTTTAACCTTTCCACAT--TGACTACAA 5978 Query 42109 -TTTTAGAAGATGGATACCATCTATCAGCTTCAATGAACTCAATACCA-TATTTTTCACA 42166 | || || |||||||| ||||||| ||| | | |||||||| || || ||| ||| Sbjct 5977 GTCTTTGATGATGGATAAAATCTATCTGCTACTACTAACTCAATTCCTCTAAATTT-ACA 5919 Query 42167 CTTATATTTCATTTGTCGTTTAAACTCATGAAGTTTTTGATTAGCAAACGCTTTAGATAA 42226 |||||||| | ||||| |||||| |||| || ||| || | || | |||||| Sbjct 5918 CTTATATTGAAGTTGTCTTTTAAATTCATAAAAACCTTGTTTTCTTATGGCATCAGATAA 5859 Query 42227 GTGTTTATTCTTCATCATCCCTTTAATATTTAAAGTTTCCATTACAATTCGATATGGTTT 42286 |||||||| |||||||| ||||||| ||||||| ||| ||||||| || ||||| || Sbjct 5858 ATGTTTATTTTTCATCATTCCTTTAACATTTAAATCTTCTATTACAACTCTGTATGGCTT 5799 Query 42287 GGTTTTCACGATATCGTTTGTCGTTTGATGAAGATGGTTGGTTCTGATATTTGATAATCT 42346 ||||||||| ||| |||| ||| |||||||| ||| |||| || || | ||||| Sbjct 5798 GGTTTTCACTATACTTGTTGTACTTTCATGAAGATAGTTATTTCTAATGTTAGCCAATCT 5739 Query 42347 TCTATGCAAGTGTTGTATCTCATTTTCGATTTTTATAATGTTGCTCGTTTTGACGAAACG 42406 |||||| | |||||||| ||||| | |||||| || || | |||||||| | || Sbjct 5738 TCTATGGATTTGTTGTATACACTTTTCAAGTTTTATTATATTTTTAGTTTTGAC-ATAC- 5681 Query 42407 GTTCCCCTCCTTATTCATTTTGT----ATTTACGAGAAACTTGACGTTGCAACCGACGAA 42462 ||| ||||| || ||||| | |||| | | ||||| | ||| | | | Sbjct 5680 --TCCTTTCCTTTTTTATTTTTTTCATATTTTCTACTCACTTGTCTTTGTAGTCTTTTTA 5623 Query 42463 GACGTTTCTCTACTTCTCTTACTTCATTTGTTTTGTTGATGTTTTCAAACACTTGACCAC 42522 | || || | || || ||| ||| |||| || || ||| ||| ||| |||| Sbjct 5622 ATCTCTTTTCAATTTTCCTAACTACATAACTTTTATTTATATTTCTAAATACTGTACCAT 5563 Query 42523 CTGAACATACTGCTAGCTCTTTTACGCCGACATCAATCCCTAGCGAAACATCTGTTAATT 42582 | || |||| ||||| ||| | || | || || |||| || ||||||||||| | Sbjct 5562 CAGAGCATATTGCTAAAATTTTCAATCCTAAGTCTATTCCTAATGATACATCTGTTAAAT 5503 Query 42583 CCGTTGTTTG--TGGTTCTTCTTCAATTCCTACAGACAGATACCAGTACTTACCATCAAA 42640 | || ||| | |||||| ||| || ||||| || | |||||| ||||| |||| | Sbjct 5502 C--TTCTTTAATTTGTTCTTTTTCTATACCTACCGAGATATACCAATACTTGTTATCATA 5445 Query 42641 ACTGATTCTTGGATTGTAGTACTTTACGTCCATTGGTATTCGTTCAGATATTTTCATCCA 42700 || | ||||| ||||| || | || |||| | ||||| |||| ||||| Sbjct 5444 TGATATACGAGGATTACTATACTTAACTCCAATAGGTAGTTGTTCATTAGTTTTTATCCA 5385 Query 42701 ACCAACTTTTTCAAT-----CAAGGCTTTATTATTNNNNNNNNNNNNNNNNNNNNNNNNN 42755 |||||| |||||||| | | || | || || Sbjct 5384 ACCAACCTTTTCAATATTAACTAATCTATTTTCTT--TAACTTTTAACTTTACATTATCA 5327 Query 42756 NNNTAAAAAGACGGTTTTGACTTCTTTCTGTTTTTAAACTTCGGTCTCTTTGCTTGTTTC 42815 || || || ||| ||| ||||| | |||| ||| | | || | | Sbjct 5326 TTATAGAAGGATTTTTTACTCTTTTTTCTACTCTTAAGTCGTGGTTTATCTGATAATCCA 5267 Query 42816 GCAAAGAATTTTTTATACGCATCACAAGCATCTTTAATTGCTTGTTTTGTGATATTATTG 42875 |||||| ||||||| |||| |||||||||||| | |||||||| | | |||||| Sbjct 5266 TTGAAGAATCTTTTATAAGCATTACAAGCATCTTTTACAGCTTGTTTAGCAACATTATTA 5207 Query 42876 GACACCTCATACAACCAAACATATTCTTCAGTTTGTTTTAAAACGGTCAATTCTTTACGA 42935 || || |||| ||||| || | |||| ||| |||| ||| ||||| || | Sbjct 5206 GATACTTCATTTAACCA---ATTTAATTCATTTTTCTTTAGCTTGGTTAATTCCTTTCTC 5150 Query 42936 AGAATGCCATCAGATATGAATTTATTTCCGTTCTTGTGGTTTTCTTCTTGCTTTCCCAAT 42995 | ||| |||||| |||| ||||| || || | | ||||||||||| ||| | | Sbjct 5149 AAAATTCCATCATATATAAATTTTCCACCATTTTCATAATTTTCTTCTTGTTTTGAAAGT 5090 Query 42996 GTCCAGTTATATGCCCATCTCGCTGTTCCTGCTGATTTCCAAAGTTGTCGTTCCTGTTCT 43055 ||||| |||||| | || || ||||| |||| | |||||||| | || ||| | Sbjct 5089 GTCCAATTATATATAAACCTTGCAGTTCCAACTGACTGCCAAAGTTTTTTCTCTTGTATT 5030 Query 43056 TTAGTTGGTTTTAACCGAACtttttttGCTAGTATCAT 43093 | | |||| | || | ||||||||| | ||||||||| Sbjct 5029 TCACTTGGATACAATCTAACTTTTTTCGATAGTATCAT 4992 >seq616 Length=43856 Score = 120 bits (132), Expect = 1e-22 Identities = 340/510 (67%), Gaps = 22/510 (4%) Strand=Plus/Minus Query 41895 CTACTTTCGTTTGATATAACACTCCGAGGGCGTAAATTCGGATACAACGAATC-CTACAT 41953 ||||| | |||| ||||| || ||| | ||| |||||||| | | ||| |||||| Sbjct 37950 CTACTCTAGTTT-ATATAGCAGTCCAAAGGCTTAAATTCG-ACCTAGTCAATGTCTACAT 37893 Query 41954 ATTAGCAATAACGTTT-AGGTG--TTAATTTGCTAATTGATAATATGATAAGTTGATAGA 42010 ||||||| | | ||| | || || | |||||||| ||||| || ||| || ||| Sbjct 37892 ATTAGCATAATCTTTTTATTTGATTTTCTATGCTAATTTATAATTTGCTAAATTAATACT 37833 Query 42011 TGCATTTAAATCCCTATCCATTACAAGACCGCAATC---ACAGCGATATAC-TCGGTCAG 42066 ||||||| ||| |||| |||| |||| || | | | | ||| | |||| Sbjct 37832 TGCATTTTTATCTCTATGAATTATAAGATTACACTTTGGATTGGTACATATATAGGTCCT 37773 Query 42067 ATAACTTTAGGTCTT-------TCTTAACGCTTCCACAACATGAACACATTTTAGAAGAT 42119 || |||| ||||| | || | || |||||| ||||| | |||| | | Sbjct 37772 AT--CTTTTAGTCTTAAATCCTTTTTGATAGTTTTACAACAAGAACAAAGTTTACTACTT 37715 Query 42120 GGATACCATCTATCAGCTTCAATGAACTCAATACCATATTTTTCACACTTATATTTCATT 42179 ||||| ||||||| |||| || || ||||| |||| | | | ||||||| || Sbjct 37714 GGATAAAATCTATCTGCTTTAACAAATTCAATTCCATTCCACTTAAATTTATATT-CAAG 37656 Query 42180 TGTCGTT-TAAACTCATGAAGTTTTTGATTAGCAAACGCTTTAGATAAGTGTTTATTCTT 42238 | | | | |||| | || || ||| | | || |||||||||||| |||||||| || Sbjct 37655 TATAGCTATAAATTTATTAAAACATTGTTCTGAAATCGCTTTAGATAAATGTTTATTTTT 37596 Query 42239 CATCATCCCTTTAATATTTAAAGTTTCCATTACAATTCGATATGGTTTGGTTTTCACGAT 42298 ||||| ||||| | ||||||| ||| | ||| | || | | || || |||||||| || Sbjct 37595 TATCATTCCTTTTACATTTAAATCTTCAACTACTACTCTACAAGGCTTAGTTTTCACTAT 37536 Query 42299 ATCGTTTGTCGTTTGATGAAGATGGTTGGTTCTGATATTTGATAATCTTCTATGCAAGTG 42358 || | |||||||| | || || ||| |||| || ||| || | || | Sbjct 37535 TGTATTAATAGTTTGATGTATGTGATTTAATCTAATATCTG-CAATTTTTTTTGAACAAT 37477 Query 42359 TTGTATCTCATTTTCGATTTTTATAATGTT 42388 || ||||| ||||| |||||||| || || Sbjct 37476 TTTTATCTGTTTTTCAATTTTTATGATATT 37447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169765108676644